PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507405.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 434aa    MW: 47206.5 Da    PI: 8.7135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507405.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-124975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ + C++++rtG C yG++C+++H++
  XP_016507405.1 49 PGVPDCSYYMRTGSCGYGANCRYNHPR 75
                    5789*********************96 PP
2zf-CCCH39.11.2e-1296120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++CkF+H++
  XP_016507405.1  96 EPMCQYYLRTGACKFGASCKFHHPR 120
                     789********************96 PP
3zf-CCCH33.66.5e-11142166327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C+++++tG+Ck+G  Ck++H++
  XP_016507405.1 142 EIECSYYLKTGHCKFGIACKYHHPQ 166
                     568********************97 PP
4zf-CCCH37.54.1e-12296322127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++tG Ck+G++C+++H+p
  XP_016507405.1 296 PGQPTCQYYMKTGDCKFGSSCRYHHPP 322
                     57899********************97 PP
5zf-CCCH27.84.4e-09343368227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C+f++  G+Ck+G  CkF H++
  XP_016507405.1 343 GVQPCSFYLLKGFCKFGRACKFDHPM 368
                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5584876IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-74875IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42293121IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-593120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-698120IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-999120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014139167IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5143166IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239295323IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4301321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587341369IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6341368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5343370IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6343368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MELYGRSTGS NGSQSDHQSE WVPVEQESGL DESMQRLGLW GREIYPERPG VPDCSYYMRT  60
GSCGYGANCR YNHPRDRAYG AKMQLERVEF PERLGEPMCQ YYLRTGACKF GASCKFHHPR  120
NLGGSLSNVP LNTYGYPLRP GEIECSYYLK TGHCKFGIAC KYHHPQTAGI SAPAPARPFY  180
PTVQSLPAPP EEYNSASTGL RVARPPLLPG SYVPSAYGPV LLHPGVVTIQ NWNPYSGPVS  240
PALSPGAQPS AAVTSIYGIS QLASSTHAFA GPYSPLHSAA SPSSKTQKEK SFPDRPGQPT  300
CQYYMKTGDC KFGSSCRYHH PPDWIASKTN FAISPLGLPL RPGVQPCSFY LLKGFCKFGR  360
ACKFDHPMGT VQYSSSASSL PDLPIAPYML RSSFAFAPTL LPELQAGFVS GSKVDAASLS  420
RPSSSLKVQL VELT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-113HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-113HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626457.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_016507405.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_016507409.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-172C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D1T90.0A0A1S4D1T9_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGXP_009626457.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-175C3H family protein