PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016507149.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1019aa MW: 112153 Da PI: 5.4893

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	619	670	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016507149.1 619 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 670 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	604	690	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	622	670	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.11E-23	923	1010	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.5E-26	924	1005	No hit	No description
PROSITE profile	PS51745	24.601	924	1006	IPR000270	PB1 domain
SMART	SM00666	6.0E-23	924	1006	IPR000270	PB1 domain
Pfam	PF00564	2.5E-17	925	1005	IPR000270	PB1 domain
CDD	cd06407	4.85E-39	925	1005	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MSEPEEEMNH MFRSKPKDFL TPPPRTTTTT TQHTVAAENQ NQREPSLMMD LDLDLDASWS 60 FDQIFAAAAA SNNHMSPFLV STTASEQPCS PLWAFSDENE DNKPSTGNAL STASLRLSSY 120 PRFLTYTGDH EAAAEALSVA DDKKRIPPPI MGLTPLDCMD GSCIIKERMT QALRYLKEST 180 GERVLAQVWA PVKNGSRYML TTSGQPFVLD PDCNGLHQYR MVSLMYMFAV DGETDGVLGL 240 PGRVYRKKLP EWTPNVQYYS SKEFPRLNHA LHYNVRGTLA LPVFEPSGQS CVGVLEIIMT 300 SQKINYAPEV DRVCKALEAV NLKSSEILDH PNTQICNEGR QNALVEILEI LTAVCETYKL 360 PLAQTWVPCR HRSVLADGGG LKKSCSSFDG SCMGQVCMST TDVSFYVVDA HMWGFREACA 420 EHHLQKGQGV AGRAYASQKS CFCEDIRLFC KTEYPLVHYA RLFGLSSCFA ICLRSTYTGN 480 DDYILEFFLP PNDGDYNDQL ALLNSLLLTM KQHFRSLRVA SGEELEHDWG SVEVIKASTE 540 DKLGSRLESV PTTKSLPQPA SVVNGRVPPD LMEEQESPVE LNVAKVAEGV NGTAEAHNHA 600 SFSENKGIGK KSERKRGKAE KTISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS 660 RWPSRKINKV NRSLSKLKRV IESVQGADGT FSLTSLAPNS LPVAVGSISW PAGMNGSPCN 720 ASEYHEEKNE LSNQGMPGRH EEAEPSNQML ESRIIGNEEL SPKQNGFVRE GSHRSRTGSG 780 SREESAGTPT SHGSCQGSPF PANESSPQNE LVNSPTQESS VKVGGSSEPA RPTTGEINLS 840 TAFLMPGPYI PEHTQQLFGG MLVEDAGSSH DLRNLCPAGD AMFDDRVPEY SWTNPPCSNG 900 IAKDQVSLPA ENMPQFSTRP EVTSVTIKAT YREDIIRFRL LLSSGIFKLK EEVAKRLKLE 960 MGTFDIKYLD DDHEWVLIAC DADLQECVDI SRSSGSNVVR LLVHDIMPNL GSSCESSGE

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MSEPEEEMNH MFRSKPKDFL TPPPRTTTTT TQHTVAAENQ NQREPSLMMD LDLDLDASWS  60
FDQIFAAAAA SNNHMSPFLV STTASEQPCS PLWAFSDENE DNKPSTGNAL STASLRLSSY  120
PRFLTYTGDH EAAAEALSVA DDKKRIPPPI MGLTPLDCMD GSCIIKERMT QALRYLKEST  180
GERVLAQVWA PVKNGSRYML TTSGQPFVLD PDCNGLHQYR MVSLMYMFAV DGETDGVLGL  240
PGRVYRKKLP EWTPNVQYYS SKEFPRLNHA LHYNVRGTLA LPVFEPSGQS CVGVLEIIMT  300
SQKINYAPEV DRVCKALEAV NLKSSEILDH PNTQICNEGR QNALVEILEI LTAVCETYKL  360
PLAQTWVPCR HRSVLADGGG LKKSCSSFDG SCMGQVCMST TDVSFYVVDA HMWGFREACA  420
EHHLQKGQGV AGRAYASQKS CFCEDIRLFC KTEYPLVHYA RLFGLSSCFA ICLRSTYTGN  480
DDYILEFFLP PNDGDYNDQL ALLNSLLLTM KQHFRSLRVA SGEELEHDWG SVEVIKASTE  540
DKLGSRLESV PTTKSLPQPA SVVNGRVPPD LMEEQESPVE LNVAKVAEGV NGTAEAHNHA  600
SFSENKGIGK KSERKRGKAE KTISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS  660
RWPSRKINKV NRSLSKLKRV IESVQGADGT FSLTSLAPNS LPVAVGSISW PAGMNGSPCN  720
ASEYHEEKNE LSNQGMPGRH EEAEPSNQML ESRIIGNEEL SPKQNGFVRE GSHRSRTGSG  780
SREESAGTPT SHGSCQGSPF PANESSPQNE LVNSPTQESS VKVGGSSEPA RPTTGEINLS  840
TAFLMPGPYI PEHTQQLFGG MLVEDAGSSH DLRNLCPAGD AMFDDRVPEY SWTNPPCSNG  900
IAKDQVSLPA ENMPQFSTRP EVTSVTIKAT YREDIIRFRL LLSSGIFKLK EEVAKRLKLE  960
MGTFDIKYLD DDHEWVLIAC DADLQECVDI SRSSGSNVVR LLVHDIMPNL GSSCESSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507149.1	0.0	PREDICTED: protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S4D1K8	0.0	A0A1S4D1K8_TOBAC; protein NLP7-like
STRING	XP_009773779.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]