PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490925.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 352aa    MW: 39661.9 Da    PI: 7.0104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.56.4e-34195252259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp++v++tYeg+Hnh+
  XP_016490925.1 195 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSIVITTYEGQHNHH 252
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-35180254IPR003657WRKY domain
SuperFamilySSF1182906.54E-30186254IPR003657WRKY domain
PROSITE profilePS5081132.661189254IPR003657WRKY domain
SMARTSM007749.9E-40194253IPR003657WRKY domain
PfamPF031061.5E-26195252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MADEIRDFYY HQPFQEDIRL GYNNLYSQTR VGDSNDSSVV QNIHMLDPSF MSYTTTHEFL  60
HGSSSDYANS LGKPFGFSAP STPSDQAFSS IINKDHDVKP VLGAINNNDV IVGGGSETPV  120
TPNSSISNSS SNEAAADDQD SNKSTNNTKK DKEVKEILED GEDASKKENK AKKKEKTQRP  180
PKFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPYPRSYYRC TSQKCPVKKR VERSYQDPSI  240
VITTYEGQHN HHLPSTLRGN VARMLNPSML SSPSPLMAAP QAFHQQLMNM AQMPHQFYGN  300
NAFGINPPTN SSSNMYNQNV ITQHELHQQL QFSPDYGLLQ DMVPSMFLKQ EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271872551078Probable WRKY transcription factor 4
2lex_A2e-271872551078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760855.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_016490925.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A1S4BPX50.0A0A1S4BPX5_TOBAC; probable WRKY transcription factor 71
TrEMBLA0A1U7VG830.0A0A1U7VG83_NICSY; probable WRKY transcription factor 71
STRINGXP_009760855.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-55WRKY DNA-binding protein 71