PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016478548.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1019aa MW: 111289 Da PI: 5.4887

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016478548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	613	664	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016478548.1 613 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 664 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	616	664	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-18	923	1009	No hit	No description
PROSITE profile	PS51745	18.953	924	1006	IPR000270	PB1 domain
SMART	SM00666	4.6E-20	924	1006	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-20	925	1005	No hit	No description
Pfam	PF00564	1.5E-15	925	1005	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MAEPEEKITS KYLPTKSKEF SPPPPPQQSP YTAAARESTT MMMDLDLDID ASWSFDQIFA 60 AAAAVSSNPA SPFLPCSPLW AFSDDIDEKP AGNSFSGALR LSSHPRFGAT YTDDPEATTE 120 TVSVNADKGR LPSPILELAP RDYPNGSCII KERMTQALRY FKESTGERVL AQVWAPVKDA 180 GRYVLTTSGQ PFVLDPDCNG LHQYRTVSLM YMFAADGETG GVLGLPGRVF RLKLPEWTPN 240 VQYYSSKEFP RLDHALHYNV RGTLALPVFE PSGQSCLGVL ELIMTSQKIN YAAEVDKVCK 300 ALETVNLKSS EILDHPNTQV YVMGYMNQIC NEGRQNALVE ILEILTAVCE TYQLPLAQTW 360 VPCRHRSVLA DGGGLKKSCS SFDGSCMGQI CMSTTDVAFY VVDAHMWGFR EACAEHHLQK 420 GQGVAGRAYA SQKSCFCEDI TQFCKTEYPL VHYARLFGLT SCFAICLRSS HTGNDDYILE 480 FFLPPNSGDY SDQQALLNSL LLTMKQHFRS LSIASGEELE HDWSSVEIIK ASMEEKIDAK 540 PESVPAPKSL PQPTRLPNGR THLDPLGEQQ FSVESDVAKG AGSKSGTGEA PNHISPSDNK 600 PTGKKSERKR GKAEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 660 INKVNRSLSK LKCVIESVQG TEGAFTLTSL APNSLPTAVG SISWPACASG SNLPSSPLSK 720 PSVFHEEKNE FSNHGTPESH EEAEPSNQML GGRVTRKEEF IPQNGSLRAE GSHKSRTGSV 780 SREESAGTPT SQGSCQGSPS AGNEFSPQND LVNSPAHEAC MKVGGSLEAA HQTTTENNLA 840 AAFLIPRPFI PERAQEPFGG MLVEDAGSSH DLRNLCPAGD ALVDECVPEY GLQNPPFSDK 900 IAKDPVYVPA DTLPQYSAWP EVTFVTIKAA YREDIIRFRL CLNSGIVKLN EEVAKRLKLE 960 LGTFDIKYRD DDLELVSISC DADLQEYVDI SLSSGSSIVR LLVHDIMSNL GSSCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MAEPEEKITS KYLPTKSKEF SPPPPPQQSP YTAAARESTT MMMDLDLDID ASWSFDQIFA  60
AAAAVSSNPA SPFLPCSPLW AFSDDIDEKP AGNSFSGALR LSSHPRFGAT YTDDPEATTE  120
TVSVNADKGR LPSPILELAP RDYPNGSCII KERMTQALRY FKESTGERVL AQVWAPVKDA  180
GRYVLTTSGQ PFVLDPDCNG LHQYRTVSLM YMFAADGETG GVLGLPGRVF RLKLPEWTPN  240
VQYYSSKEFP RLDHALHYNV RGTLALPVFE PSGQSCLGVL ELIMTSQKIN YAAEVDKVCK  300
ALETVNLKSS EILDHPNTQV YVMGYMNQIC NEGRQNALVE ILEILTAVCE TYQLPLAQTW  360
VPCRHRSVLA DGGGLKKSCS SFDGSCMGQI CMSTTDVAFY VVDAHMWGFR EACAEHHLQK  420
GQGVAGRAYA SQKSCFCEDI TQFCKTEYPL VHYARLFGLT SCFAICLRSS HTGNDDYILE  480
FFLPPNSGDY SDQQALLNSL LLTMKQHFRS LSIASGEELE HDWSSVEIIK ASMEEKIDAK  540
PESVPAPKSL PQPTRLPNGR THLDPLGEQQ FSVESDVAKG AGSKSGTGEA PNHISPSDNK  600
PTGKKSERKR GKAEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK  660
INKVNRSLSK LKCVIESVQG TEGAFTLTSL APNSLPTAVG SISWPACASG SNLPSSPLSK  720
PSVFHEEKNE FSNHGTPESH EEAEPSNQML GGRVTRKEEF IPQNGSLRAE GSHKSRTGSV  780
SREESAGTPT SQGSCQGSPS AGNEFSPQND LVNSPAHEAC MKVGGSLEAA HQTTTENNLA  840
AAFLIPRPFI PERAQEPFGG MLVEDAGSSH DLRNLCPAGD ALVDECVPEY GLQNPPFSDK  900
IAKDPVYVPA DTLPQYSAWP EVTFVTIKAA YREDIIRFRL CLNSGIVKLN EEVAKRLKLE  960
LGTFDIKYRD DDLELVSISC DADLQEYVDI SLSSGSSIVR LLVHDIMSNL GSSCESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803234.1	0.0	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_016478548.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S4APX5	0.0	A0A1S4APX5_TOBAC; protein NLP7-like isoform X1
TrEMBL	A0A1U7YVL8	0.0	A0A1U7YVL8_NICSY; protein NLP7-like isoform X1
STRING	XP_009803234.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]