PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472690.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 345aa    MW: 39151.9 Da    PI: 7.6884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18134184256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  XP_016472690.1 134 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 184
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.00E-14133192No hitNo description
SMARTSM003803.9E-33134197IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-22134191IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-29134192IPR001471AP2/ERF domain
PROSITE profilePS5103222.958134191IPR001471AP2/ERF domain
PfamPF008471.4E-12135184IPR001471AP2/ERF domain
PRINTSPR003676.1E-10135146IPR001471AP2/ERF domain
PRINTSPR003676.1E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSKIQESMSK IQENMSYTYD EAAQIRSSLS QILLTSSTNA LDSIFSHCQE SNNQMPTTNP  60
IFEPLGSSVG NNNNYVPLPD NFGSSVYLRQ KDLLQKFWEE NRTNVTIPTT STQTPHQNNS  120
LYSQNNICPS KKKLYRGVRQ RHWGKWVAEI RLPQNRMRVW LGTYETAEAA AYAYDRAAYK  180
LRGEYPRLNF PNIRDDLSKL GFGDSTKMNA LKNSVDAKIQ AMCQKVKRER AKKGAKKIVE  240
SDKKVAKSLD LESSSCSSSI VCNESWSNSD VISQSTSEDR LWKSENSPCS LLDDCHVGPK  300
NDDSNCHITG ITHQFERPME LEFEDCSLGR MPSFDPELIW SILAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21130191163ATERF1
3gcc_A3e-21130191163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-152HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472690.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
TrEMBLA0A1S4A7S90.0A0A1S4A7S9_TOBAC; ethylene-responsive transcription factor ERF061-like
STRINGXP_009618993.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-60ERF family protein