PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471592.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 313aa MW: 35225.9 Da PI: 6.8428

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	1e-32	186	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr+YYrCt+++C+vkk+vers edp++v++tYeg+Hnh XP_016471592.1 186 EDGYRWRKYGQKAVKNSPFPRNYYRCTTQKCNVKKRVERSYEDPSIVITTYEGQHNHY 243 8********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-34	170	244	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-29	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	31.468	180	245	IPR003657	WRKY domain
SMART	SM00774	4.5E-38	185	244	IPR003657	WRKY domain
Pfam	PF03106	9.1E-26	186	242	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MSNNPFYHDY MGTEGINTFP FFGENSSNYN HPPPNNIQNP HQQFVPSSYM TLTECLHSSM 60 DYNTLSSAFG MSCSSSEVVC PQIDRHDYSS RKSSVVSATE SALDSPLEGA SVEIPPTTNS 120 SISSTSNEAE GEEDSSKSKK LMQGKGCQEE GDDKSKKESK AKKKGEKNPK EPRFAFMTKS 180 EIDNLEDGYR WRKYGQKAVK NSPFPRNYYR CTTQKCNVKK RVERSYEDPS IVITTYEGQH 240 NHYCPATLRG NAASMLSPSF LSSSQLIPNF PPEIFAQMLN PTSNQNLLIN SPYNYHQHQG 300 QEYGSWIHKP EPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	178	246	10	78	Probable WRKY transcription factor 4
2lex_A	1e-25	178	246	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471592.1	0.0	PREDICTED: probable WRKY transcription factor 71 isoform X1
Swissprot	Q8VWJ2	1e-54	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1S4A4J3	0.0	A0A1S4A4J3_TOBAC; probable WRKY transcription factor 71 isoform X1
STRING	XP_009766292.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	6e-48	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]