PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462729.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 488aa    MW: 54608.3 Da    PI: 6.754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.4e-13150172426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++++tGtCkyG +CkF+H+
  XP_016462729.1 150 ADCAYYMKTGTCKYGLNCKFNHP 172
                     68********************8 PP
2zf-CCCH27.26.7e-09199221527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C++++  G CkyG++Ck+ H++
  XP_016462729.1 199 ECKYYLTEGGCKYGNTCKYYHSR 221
                     7********************95 PP
3zf-CCCH40.83.7e-13242266226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++rtG CkyG++C+F+H+
  XP_016462729.1 242 GEKDCPYYMRTGSCKYGSNCRFHHP 266
                     7889********************9 PP
4zf-CCCH28.82.2e-09378402125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     ++++ C++f +tG Cky ++CkF+H
  XP_016462729.1 378 PGQPDCSYFIKTGDCKYRSNCKFHH 402
                     5789********************* PP
5zf-CCCH31.82.5e-10425450227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f++r+G+Ck+G+ CkF H++
  XP_016462729.1 425 DQAVCSFYSRYGICKFGPACKFGHPE 450
                     6789******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.145146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5146173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6148175IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826194222IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042194221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5199222IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6199221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5200221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718240268IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7240267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7242268IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10242266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6246265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878377405IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041377404IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4379402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5382406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474423451IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5423450IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-8425450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5425451IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MKAIESQQRI QNLNDSTLEK QDVGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF  60
ICKELQGLVL NQAYIEERSQ GENHEENGRE KSENECGDNY YGGGDYTWSE NGYENENDVE  120
NENSDVTGSK QWGFKGNRKG LNYPLRPDAA DCAYYMKTGT CKYGLNCKFN HPSRRRNQQW  180
AMEKGKQKDE SEERAGQIEC KYYLTEGGCK YGNTCKYYHS RRKGAISPVL NINFLGLPIR  240
PGEKDCPYYM RTGSCKYGSN CRFHHPDPST VAGGDPSSGY NNGGSAPVKS APYPAGSSWS  300
SPRALNETAS FVPVVYPASQ GIPLLSPQWN GYLAPVYPTS GKSLPTPPEF IRKDPATKTN  360
FYTRAQQPWL VEEYPERPGQ PDCSYFIKTG DCKYRSNCKF HHRKNQTSKT NMSALNDKGL  420
PLRPDQAVCS FYSRYGICKF GPACKFGHPE HYDNSASSIG SVFDQPPFGN SATSYGSRWR  480
GKETEVAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260201e-34AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9754451e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803257.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_016462729.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1S3ZEF10.0A0A1S3ZEF1_TOBAC; zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1U7YGM00.0A0A1U7YGM0_NICSY; zinc finger CCCH domain-containing protein 43-like isoform X1
STRINGXP_009803257.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-110C3H family protein