PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460970.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 264aa    MW: 29648.1 Da    PI: 9.4375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460970.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1981131256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_016460970.1  81 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 131
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.87E-1780139No hitNo description
SMARTSM003805.2E-3681144IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2281138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3181139IPR001471AP2/ERF domain
PROSITE profilePS5103223.30181138IPR001471AP2/ERF domain
PfamPF008472.3E-1382131IPR001471AP2/ERF domain
PRINTSPR003673.0E-108293IPR001471AP2/ERF domain
PRINTSPR003673.0E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVSKLNVLSR KIPGTVHVFT LFTTVHWGTA HGTVHGVLYM VLFGVLYTAL FGGTVHCTVH  60
VVLFTVLYTG YCSRFPEKKK LYRGVRQRHW GKWVAEIRLP QNRMRVWLGT YDTAEAAAYA  120
YDRAAYKLRG EYARLNFPNI RDPSKLGFGD SEKMNAVKNA VDAKIQAICQ KVKREKAKKG  180
AKKKSENESK VKETMDSSSS TSSLVGDVIS PSVSEDGLWK SENSDCSIFG DCLKEPLMES  240
EFDSCSLARM PSFDPELIWE VLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2178138263ATERF1
3gcc_A4e-2178138263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460970.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-56ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3Z9430.0A0A1S3Z943_TOBAC; ethylene-responsive transcription factor ERF061-like
STRINGXP_009759539.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-47ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]