PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455303.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 291aa    MW: 32925.3 Da    PI: 8.2543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19108158256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_016455303.1 108 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 158
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.03E-17107166No hitNo description
SuperFamilySSF541711.5E-22108165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-31108166IPR001471AP2/ERF domain
PROSITE profilePS5103223.301108165IPR001471AP2/ERF domain
SMARTSM003805.2E-36108171IPR001471AP2/ERF domain
PfamPF008472.7E-13109158IPR001471AP2/ERF domain
PRINTSPR003673.5E-10109120IPR001471AP2/ERF domain
PRINTSPR003673.5E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNTIQENNTM SCIFDEGAQI RSSLSQLILT SGTNTLDSIF SHCQETNQIT SPVFEPLGSS  60
VYLRQRDLLQ KIFQENITNI PIPTTSTTFP LQNSLYTQNY RFPEKKKLYR GVRQRHWGKW  120
VAEIRLPQNR MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNIRDP SKLGFGDSEK  180
MNAVKNAVDA KIQAICQKVK REKAKKGAKK KCENESKVKE SIDSSSSTSS LVGDVISPSV  240
SEDGLWKSEN SNCSIFGDCL KEPLMESEFD SCSLARMPSF DPELIWEVLA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21105165263ATERF1
3gcc_A2e-21105165263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455303.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-71ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3YT290.0A0A1S3YT29_TOBAC; ethylene-responsive transcription factor ERF061
STRINGXP_009604256.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-61ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]