PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454891.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 414aa    MW: 47140.2 Da    PI: 4.8892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19197247256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  XP_016454891.1 197 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 247
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.78E-34196256No hitNo description
Gene3DG3DSA:3.30.730.103.2E-32197255IPR001471AP2/ERF domain
SMARTSM003801.4E-39197260IPR001471AP2/ERF domain
PROSITE profilePS5103223.024197254IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22197255IPR016177DNA-binding domain
PfamPF008472.4E-12198247IPR001471AP2/ERF domain
PRINTSPR003676.9E-11198209IPR001471AP2/ERF domain
PRINTSPR003676.9E-11220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MATSEDYSKS TTAIREEMDC DKGRDFDDNT QQRRPVFEEA SISQRRFKKI KSPERPHHSQ  60
SPTSYSQQPL SQSSVPYNNP ISPPPPSPSK LVFPFSFDGT QQSIENLYQM RPNTTPLFPP  120
QNQNQQQMIS FSPQQCPYPP YFAGELGQSQ NQQQLLQYWN ETLNLSPRGR MMMMSRLGQD  180
SKGLFRPQLQ PINTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAAMAYDRE  240
AFKLRGENAK LNFPELFLGK DREGPSIETV ESTHTKQPDQ ESESLQLEPL NIELLPPPPP  300
LPPPPPEVDN QDEDSGMGSS EVTACDEVQG VSLQSTELVW GENEMAEAWF NAIPAGWGPG  360
SPVWDDLDTN NSNFIFPPNF HFGNVHSHNS DPHNQHIHDN TDPSSPSCPM RPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21196254160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21196254463ATERF1
3gcc_A3e-21196254463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-110HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454891.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1S3YRR40.0A0A1S3YRR4_TOBAC; ethylene-responsive transcription factor ERF054-like
STRINGXP_009781334.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-59ERF family protein