PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016454215.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 737aa MW: 84689.6 Da PI: 5.2508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016454215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	129	212	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a +++++ ++++w+v++++leHnH + XP_016454215.1 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAIIRLRLVESSRWRVDEVKLEHNHLF 212 69**************************************99888.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-19	129	212	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-25	332	418	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	618	654	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.4E-5	629	652	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	629	656	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MLQMEEGLGT SEQLPEDEGS DNEVDSEEAF DITCNGDQVL NVEADELEAT TGQILEFESH 60 ETEKSCERVL DFESSDPKDN SHQLLEFHSN GLGGGDTTII DDHTGSSPGK FYPPPVVGME 120 FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE 180 TRTGCLAIIR LRLVESSRWR VDEVKLEHNH LFDPERVQNS KSHKKMDAGV KRKLEPAVDV 240 EVQTIKLYRT PAVETLGYGS SDERAFSGQV DGSTHLKLKE GDIQVIYNFF CRVQLTKPNF 300 FYIMDLNDEG YLKNVFWIDP RSRAAYAYFG DVVVVDTTCV SKKYDIPLLA FFGLNHHKQT 360 LLLGCGLLAD ESFETYVWLL RAWLSCMSGR PPQTIITDRC MALQNAISEV FPRAQHRLNL 420 SIILGSIFNT VGQVGESEVF REVLYNTVYN SLKVDEFEVA WEEMVHQFGF RGYGWLQSLY 480 EDRERWAPIY MKDTFFAGIS IDQPGEFMSP FFDGYVHKHT NLKDFFDIYD FVLQKMRQKE 540 VHCDFESREF SPVLRTRCNY ELQLSKLYTK EIFLKFQDEM ALMSNCSGIA QVHANGPIIT 600 YIVTERGAQG DTGDARNFEV TYDKMGVEVR CICSCFNFKG YLCRHALSVL NYNGIEEIPN 660 HYILSRWRKD FKRLYAPELG SSNIDVSNPV QRFDHLHKRA MQVADEGMTS QDHYMVAWQA 720 FKESLNKVRL AADKHVS

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MLQMEEGLGT SEQLPEDEGS DNEVDSEEAF DITCNGDQVL NVEADELEAT TGQILEFESH  60
ETEKSCERVL DFESSDPKDN SHQLLEFHSN GLGGGDTTII DDHTGSSPGK FYPPPVVGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAIIR LRLVESSRWR VDEVKLEHNH LFDPERVQNS KSHKKMDAGV KRKLEPAVDV  240
EVQTIKLYRT PAVETLGYGS SDERAFSGQV DGSTHLKLKE GDIQVIYNFF CRVQLTKPNF  300
FYIMDLNDEG YLKNVFWIDP RSRAAYAYFG DVVVVDTTCV SKKYDIPLLA FFGLNHHKQT  360
LLLGCGLLAD ESFETYVWLL RAWLSCMSGR PPQTIITDRC MALQNAISEV FPRAQHRLNL  420
SIILGSIFNT VGQVGESEVF REVLYNTVYN SLKVDEFEVA WEEMVHQFGF RGYGWLQSLY  480
EDRERWAPIY MKDTFFAGIS IDQPGEFMSP FFDGYVHKHT NLKDFFDIYD FVLQKMRQKE  540
VHCDFESREF SPVLRTRCNY ELQLSKLYTK EIFLKFQDEM ALMSNCSGIA QVHANGPIIT  600
YIVTERGAQG DTGDARNFEV TYDKMGVEVR CICSCFNFKG YLCRHALSVL NYNGIEEIPN  660
HYILSRWRKD FKRLYAPELG SSNIDVSNPV QRFDHLHKRA MQVADEGMTS QDHYMVAWQA  720
FKESLNKVRL AADKHVS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786841.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Refseq	XP_016454215.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1S3YQF8	0.0	A0A1S3YQF8_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBL	A0A1U7XB12	0.0	A0A1U7XB12_NICSY; protein FAR1-RELATED SEQUENCE 8-like isoform X1
STRING	XP_009786841.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]