PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016439116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 667aa    MW: 77078.8 Da    PI: 6.2426
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016439116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.1e-2260143291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn YAk  GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++ +++w+++++eleHnH l+p
  XP_016439116.1  60 FYNCYAKVQGFGVRVSNTWYR-KSRERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMANKRWRIIEVELEHNHLLSP 143
                     9***************99997.66679**************99888.....***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-1960143IPR004330FAR1 DNA binding domain
PfamPF105519.2E-26264358IPR018289MULE transposase domain
PROSITE profilePS509669.31549585IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-5560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDGLSLNAEP IFDDETEEFK IDGECAMTEY VGQSGVIEGK NPVLPAVGME FETYEDVYYF  60
YNCYAKVQGF GVRVSNTWYR KSRERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMANKRWRI IEVELEHNHL LSPSAEKFYK SHRNISSGSK RPLQMDANQD VQKIRLFRTV  180
IIDPDDDRKL NIDEGEFRNT IDQSNNHLIL KSGDAQAIHS FFIDLQLVNP DFFYVMDLNE  240
KGCLRNVFWA EARFKAAYNY FGDVVRIDTA CLTTKYEVPL VVIAGVNHHG QSVPLGCGLV  300
AGETVESFIW LLRAWLTYMV GRPPQTIIID QSRAMQTAIA DVLPQSSHCI SLSHIMKKVP  360
EELGGLHEYE VIKKEFTKAI YQSSRTDEFE AAWEDMILCH GIRDHKWLQT LHEDRKHWVP  420
VYLKDTFLAG MFPITVSEKE ASPFDEYLSN HTPLKEFLDA YNQCPKEIYQ REALADTKSR  480
NSSFMLKSRF YFEMQLSKVY TNHIFEKFQI EIEGMFSCLS TRQVSIDGSI VTYMVKEHEV  540
ENVNEARDYE VTLNTVVAEV LCACGLFNLE GFLCRHALCV LSQNGFEEIP PQYILSRWRK  600
DIHRSYVLDY GCNLIDTKNS VHRYDNLYKC AVKLVEEGRK SNERYKFTLE ALGEILKEVS  660
LQDHNTL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439116.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A1S3XGQ80.0A0A1S3XGQ8_TOBAC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_009631085.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6