PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016436659.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1055aa MW: 114746 Da PI: 5.3658

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016436659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	610	661	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016436659.1 610 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 661 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	600	681	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	613	661	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-20	959	1045	No hit	No description
SMART	SM00666	6.1E-23	960	1042	IPR000270	PB1 domain
PROSITE profile	PS51745	19.935	960	1042	IPR000270	PB1 domain
Pfam	PF00564	2.7E-16	961	1041	IPR000270	PB1 domain
CDD	cd06407	1.06E-31	961	1041	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-22	961	1041	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence Send to blast
MSEPEEKITS KNPRPKSKEF SSPPPQQPPH TAMEKESTTM MMDLDIDASW SFDQIFAAAA 60 AVSSNPTSPF LPCSPLWGFS DDIEEKPAGN SFSGALRFSG HPRFGATYTD DPEATTETVS 120 VNADKGRLPS PVLELAPRDY PNGSCIIKER MTQALRYFKE STGERVLAQV WAPVKDAGRY 180 VLTTSGQPFV LDPDCNGLHQ YRTVSLMYMF AADGETGGVL GLPGRVFRLK LPEWTPNVQY 240 YSSKEFPRLD HALHYNVRGT LALPVFEPSG QSCLGVLELI MTSQKINYAA EVDKVCKALE 300 TVNLKSSEIL DHPNTQVYVM GYMNQICNEG RQNALVEILE ILTAVCETYQ LPLAQTWVPC 360 RHRSVLADGG GLKKSCSSFD GSCMGQICMS TTDVAFYVVD AHMWGFREAC AEHHLQKGQG 420 VAGRAYASQK SCFCEDITQF CKTEYPLVHY ARLFGLTSCF AICLRSSHTG NDDYILEFFL 480 PPNSGDYSDQ QALLNSLLLT MKQHFRSLSI ASGGELEHDW SSVEIIKASI EEKIDAKPES 540 VSAPKSLPQP TRLPNGWTNL DPLGEQQFSV ESDVAKGAGS KCGTGEAPNH VSPSDNKPTG 600 KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKINK 660 VNRSLSKLKC VIESVQGTEG AFTLTSLAPN SFPAAVGSIS WPACASGSNL PSSPLSKPSV 720 FPEEKNEFSN HGTPESHEEA EPSNQMLGGR VTRKEEFTPQ NGFLYAEGSH KSRTGSVSRE 780 ESAGTPTSQG SCQGSPSAGN EFSPQNDLVN SPAREACMKA SAGTPTSQGS CQGSPSAGNE 840 FSPQNDLVNS PAHEACMKVG GSLEAAHQTT TENNLAAAFL IPRPFIPERA QEPFGGMLVE 900 DAGSSHDLRN LCSAGEAQVD ERVPEYSLPN PPFSDAIAKD PVYVPADTTP QYSAWPEVTF 960 VTIKAAYRED IIRFRLCLNS GIVKLKEEVA KRLKLELGTF DIKYLDDDLE VVSISCDADL 1020 QECVDISLSS GSSIVRLLVH DIMSNLGSSC ESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence Send to blast

MSEPEEKITS KNPRPKSKEF SSPPPQQPPH TAMEKESTTM MMDLDIDASW SFDQIFAAAA  60
AVSSNPTSPF LPCSPLWGFS DDIEEKPAGN SFSGALRFSG HPRFGATYTD DPEATTETVS  120
VNADKGRLPS PVLELAPRDY PNGSCIIKER MTQALRYFKE STGERVLAQV WAPVKDAGRY  180
VLTTSGQPFV LDPDCNGLHQ YRTVSLMYMF AADGETGGVL GLPGRVFRLK LPEWTPNVQY  240
YSSKEFPRLD HALHYNVRGT LALPVFEPSG QSCLGVLELI MTSQKINYAA EVDKVCKALE  300
TVNLKSSEIL DHPNTQVYVM GYMNQICNEG RQNALVEILE ILTAVCETYQ LPLAQTWVPC  360
RHRSVLADGG GLKKSCSSFD GSCMGQICMS TTDVAFYVVD AHMWGFREAC AEHHLQKGQG  420
VAGRAYASQK SCFCEDITQF CKTEYPLVHY ARLFGLTSCF AICLRSSHTG NDDYILEFFL  480
PPNSGDYSDQ QALLNSLLLT MKQHFRSLSI ASGGELEHDW SSVEIIKASI EEKIDAKPES  540
VSAPKSLPQP TRLPNGWTNL DPLGEQQFSV ESDVAKGAGS KCGTGEAPNH VSPSDNKPTG  600
KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKINK  660
VNRSLSKLKC VIESVQGTEG AFTLTSLAPN SFPAAVGSIS WPACASGSNL PSSPLSKPSV  720
FPEEKNEFSN HGTPESHEEA EPSNQMLGGR VTRKEEFTPQ NGFLYAEGSH KSRTGSVSRE  780
ESAGTPTSQG SCQGSPSAGN EFSPQNDLVN SPAREACMKA SAGTPTSQGS CQGSPSAGNE  840
FSPQNDLVNS PAHEACMKVG GSLEAAHQTT TENNLAAAFL IPRPFIPERA QEPFGGMLVE  900
DAGSSHDLRN LCSAGEAQVD ERVPEYSLPN PPFSDAIAKD PVYVPADTTP QYSAWPEVTF  960
VTIKAAYRED IIRFRLCLNS GIVKLKEEVA KRLKLELGTF DIKYLDDDLE VVSISCDADL  1020
QECVDISLSS GSSIVRLLVH DIMSNLGSSC ESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436659.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3XA20	0.0	A0A1S3XA20_TOBAC; protein NLP6-like isoform X1
STRING	XP_009599820.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]