PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016432680.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 341aa MW: 38998.8 Da PI: 5.13

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016432680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90	1.2e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s XP_016432680.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58 68***********************************************8 PP
2	K-box	19.3	4.8e-08	102	171	1	70
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq++s+ + +++ e+ qqe+ k k ++e + r +R + G+ e ++ e q e+ L++ lk++ ++K+ XP_016432680.1 102 YQAASSPASVDSHIEEFQQEILKYKTQLEDMDRRLRMYEGDLCEITTVCEAQYREEILQETLKQVQARKQ 171 6677777789999*******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.857	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-30	2	82	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.78E-39	2	75	No hit	No description
PRINTS	PR00404	1.4E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASSPAS VDSHIEEFQQ 120 EILKYKTQLE DMDRRLRMYE GDLCEITTVC EAQYREEILQ ETLKQVQARK QVLEETYNSP 180 QAQTTTQPQM DFASQNVNVV NNVATSDSIP NTSSNTFMDW VPHSQRDPHV QILNFLDSNG 240 LLPFRDEADQ RMENMLPPSL TQLHTPTVSA VVTDHLSPNN RFENDPQRPT SSFEGIIDVN 300 NAPWPPLYPT GNDPFPETQP RERALLELFL SQLTPVNQDP L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
3mu6_A	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
6bz1_A	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_B	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_C	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_D	2e-15	1	80	1	79	MEF2 CHIMERA
6c9l_A	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	2e-15	1	89	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	2e-81	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790826.1	0.0	PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1
Refseq	XP_016432680.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
Swissprot	Q9LM46	2e-51	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1S3WYA1	0.0	A0A1S3WYA1_TOBAC; agamous-like MADS-box protein AGL104 isoform X1
TrEMBL	A0A1U7XMI4	0.0	A0A1U7XMI4_NICSY; agamous-like MADS-box protein AGL8 homolog isoform X1
STRING	XP_009790826.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	8e-54	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]