PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009791086.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 519aa    MW: 58584.5 Da    PI: 5.131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009791086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-10179200526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G +CkF+H+
  XP_009791086.1 179 DCPYFMKTGVCKFGFNCKFNHP 200
                     7********************8 PP
2zf-CCCH31.23.6e-10232256327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009791086.1 232 QIECKYYLTSGGCKYGKACKFNHSR 256
                     568********************95 PP
3zf-CCCH40.83.6e-13277301226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009791086.1 277 GEKECPYYMRTGSCKYGSNCRFHHP 301
                     7899********************9 PP
4zf-CCCH19.91.3e-06413439127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +tG Cky  +CkF+H++
  XP_009791086.1 413 PGQPDCSYFIKTGDCKYKFNCKFHHPK 439
                     5789*********************96 PP
5zf-CCCH36.11.1e-11461485327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009791086.1 461 QTVCSFYSRYGICKFGPACKFDHPE 485
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.63E-6173201IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549174202IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-8179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4180199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474229257IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4229256IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7233256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5234258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5235257IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624275303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7277302IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-11277301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5281300IPR000571Zinc finger, CCCH-type
SMARTSM003560.065412439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962412440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5417441IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6458485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131458486IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5459486IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9461485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001463485IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEEAIEQQQI QNQNQNQSPK HTQEELGFES QTPQTSLLPS DLNIQNPNQN QPNENDDEDE  60
MAMQIICEDL RDLVLNQALD KEREKEDLHH LDPEENGKIN ENEVENVEGN DDGWGDVGEY  120
GDYHYDEENR SGSVNGNDNE NDGEKENGYE GDSKEGGGFN ANNRIKKKFI YPLRPDAQDC  180
PYFMKTGVCK FGFNCKFNHP SRRKYQTLLP ILQQGTKEKG KQREESQERP GQIECKYYLT  240
SGGCKYGKAC KFNHSREKGS ISPIAEFNFL GLPIRPGEKE CPYYMRTGSC KYGSNCRFHH  300
PDPTTVAGAD RSSGYNNGGA VPVQAASHPA ASSWSSPRAL NDTAPYVPMM YPPTQGIPSP  360
NTEWNGYQAP VYPTAEKRLP TPPAFGMNNP ATKTNYYPRP LQPLLVEEYP ERPGQPDCSY  420
FIKTGDCKYK FNCKFHHPKS RVSKANSSTL NEKGLPLRPD QTVCSFYSRY GICKFGPACK  480
FDHPENYVGS GSSTEYGFDQ PQQSQMSLGW QGRELEVDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791086.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-118C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1U7XN930.0A0A1U7XN93_NICSY; zinc finger CCCH domain-containing protein 67 isoform X1
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.21e-113C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]