PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780057.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 649aa    MW: 74062.5 Da    PI: 8.3091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07462503240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE +ll ++  ++++g   +W+ I++++g+gRt +++
   XP_009780057.1 462 KPWSKEEIDLLRKGMLKYPKGtsrRWEVISEYIGTGRTVEEI 503
                      69************************************9886 PP
2Myb_DNA-binding27.85.8e-09593636445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  ++ lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   XP_009780057.1 593 WSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 636
                      ********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006253.1E-78199IPR001623DnaJ domain
SuperFamilySSF465651.44E-2088175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.6E-2094197IPR001623DnaJ domain
SMARTSM002712.1E-1696171IPR001623DnaJ domain
CDDcd062572.26E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.39597179IPR001623DnaJ domain
PfamPF002261.4E-1697176IPR001623DnaJ domain
PRINTSPR006253.1E-7120135IPR001623DnaJ domain
PRINTSPR006253.1E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.604.8E-5457504IPR009057Homeodomain-like
PROSITE profilePS512936.786459514IPR017884SANT domain
SMARTSM007177.0E-6460513IPR001005SANT/Myb domain
PfamPF002492.6E-6462503IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-7462505IPR009057Homeodomain-like
CDDcd001671.83E-4463503No hitNo description
PROSITE profilePS512939.098588643IPR017884SANT domain
SMARTSM007173.0E-8589641IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-9591645IPR009057Homeodomain-like
PfamPF002492.9E-7593635IPR001005SANT/Myb domain
CDDcd001674.54E-6593639No hitNo description
Gene3DG3DSA:1.10.10.604.8E-5593635IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MASRSSIRLI SYSEELINGE PIYISSNCFP IKALKYEPAG LAFHSAALRL SGHVEKEDSK  60
DSKEDVPTEK EQSFTYSSES YSSKGKKKSS TGEKVQDHYA LLGLSHLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLIDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPVPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEEIA RVRTLVDNAY KRDPRILGRK  300
EAEKAEKQKK KEAKLLAKKL QEEEAARIAE EEKRKKEEEG KRAAEVALQQ KKLKEKEKKL  360
LRKERSRLRT LAAPVLSQHL LGLADDDVEG LCMSLDIEQL RNLCDNADGK DELMIAELLR  420
EALGHDHNSK YENKCEKIKS HQNGSLEGKR QVPLMSSEKR EKPWSKEEID LLRKGMLKYP  480
KGTSRRWEVI SEYIGTGRTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVENS SKPESESAKA DSQESPSQNT YSQNTEDEPA ANGVSSSSDS DIWSAVQEKA  600
LVQALKTFPK ETSQRWERVA TAVPGKTMNQ CKKKFALLKE NFRNKKGAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-2018629613123Zuotin
5dje_B2e-2018629613123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780057.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016498424.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A1S4CBU00.0A0A1S4CBU0_TOBAC; dnaJ homolog subfamily C member 2-like
TrEMBLA0A1U7WJE70.0A0A1U7WJE7_NICSY; dnaJ homolog subfamily C member 2-like
STRINGXP_009780057.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain