PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009773779.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1021aa MW: 112356 Da PI: 5.4893

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009773779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	621	672	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_009773779.1 621 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 672 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.655	606	692	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	624	672	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.11E-23	925	1012	No hit	No description
PROSITE profile	PS51745	24.601	926	1008	IPR000270	PB1 domain
SMART	SM00666	6.0E-23	926	1008	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-26	926	1007	No hit	No description
CDD	cd06407	4.88E-39	927	1007	No hit	No description
Pfam	PF00564	2.5E-17	927	1007	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MSEPEEEMNH MFRSKPKDFL TPPPRTTTTT TTTQHTVAAE NQNQREPSLM MDLDLDLDAS 60 WSFDQIFAAA AASNNHMSPF LVSTTASEQP CSPLWAFSDE NEDNKPSTGN ALSTASLRLS 120 SYPRFLTYTG DHEAAAEALS VADDKKRIPP PIMGLTPLDC MDGSCIIKER MTQALRYLKE 180 STGERVLAQV WAPVKNGSRY MLTTSGQPFV LDPDCNGLHQ YRMVSLMYMF AVDGETDGVL 240 GLPGRVYRKK LPEWTPNVQY YSSKEFPRLN HALHYNVRGT LALPVFEPSG QSCVGVLEII 300 MTSQKINYAP EVDRVCKALE AVNLKSSEIL DHPNTQICNE GRQNALVEIL EILTAVCETY 360 KLPLAQTWVP CRHRSVLADG GGLKKSCSSF DGSCMGQVCM STTDVSFYVV DAHMWGFREA 420 CAEHHLQKGQ GVAGRAYASQ KSCFCEDIRL FCKTEYPLVH YARLFGLSSC FAICLRSTYT 480 GNDDYILEFF LPPNDGDYND QLALLNSLLL TMKQHFRSLR VASGEELEHD WGSVEVIKAS 540 TEDKLGSRLE SVPTTKSLPQ PASVVNGRVP PDLMEEQESP VELNVAKVAE GVNGTAEAHN 600 HASFSENKGI GKKSERKRGK AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG 660 ISRWPSRKIN KVNRSLSKLK RVIESVQGAD GTFSLTSLAP NSLPVAVGSI SWPAGMNGSP 720 CNASEYHEEK NELSNQGMPG RHEEAEPSNQ MLESRIIGNE ELSPKQNGFV REGSHRSRTG 780 SGSREESAGT PTSHGSCQGS PFPANESSPQ NELVNSPTQE SSVKVGGSSE PARPTTGEIN 840 LSTAFLMPGP YIPEHTQQLF GGMLVEDAGS SHDLRNLCPA GDAMFDDRVP EYSWTNPPCS 900 NGIAKDQVSL PAENMPQFST RPEVTSVTIK ATYREDIIRF RLLLSSGIFK LKEEVAKRLK 960 LEMGTFDIKY LDDDHEWVLI ACDADLQECV DISRSSGSNV VRLLVHDIMP NLGSSCESSG 1020 E

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MSEPEEEMNH MFRSKPKDFL TPPPRTTTTT TTTQHTVAAE NQNQREPSLM MDLDLDLDAS  60
WSFDQIFAAA AASNNHMSPF LVSTTASEQP CSPLWAFSDE NEDNKPSTGN ALSTASLRLS  120
SYPRFLTYTG DHEAAAEALS VADDKKRIPP PIMGLTPLDC MDGSCIIKER MTQALRYLKE  180
STGERVLAQV WAPVKNGSRY MLTTSGQPFV LDPDCNGLHQ YRMVSLMYMF AVDGETDGVL  240
GLPGRVYRKK LPEWTPNVQY YSSKEFPRLN HALHYNVRGT LALPVFEPSG QSCVGVLEII  300
MTSQKINYAP EVDRVCKALE AVNLKSSEIL DHPNTQICNE GRQNALVEIL EILTAVCETY  360
KLPLAQTWVP CRHRSVLADG GGLKKSCSSF DGSCMGQVCM STTDVSFYVV DAHMWGFREA  420
CAEHHLQKGQ GVAGRAYASQ KSCFCEDIRL FCKTEYPLVH YARLFGLSSC FAICLRSTYT  480
GNDDYILEFF LPPNDGDYND QLALLNSLLL TMKQHFRSLR VASGEELEHD WGSVEVIKAS  540
TEDKLGSRLE SVPTTKSLPQ PASVVNGRVP PDLMEEQESP VELNVAKVAE GVNGTAEAHN  600
HASFSENKGI GKKSERKRGK AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG  660
ISRWPSRKIN KVNRSLSKLK RVIESVQGAD GTFSLTSLAP NSLPVAVGSI SWPAGMNGSP  720
CNASEYHEEK NELSNQGMPG RHEEAEPSNQ MLESRIIGNE ELSPKQNGFV REGSHRSRTG  780
SGSREESAGT PTSHGSCQGS PFPANESSPQ NELVNSPTQE SSVKVGGSSE PARPTTGEIN  840
LSTAFLMPGP YIPEHTQQLF GGMLVEDAGS SHDLRNLCPA GDAMFDDRVP EYSWTNPPCS  900
NGIAKDQVSL PAENMPQFST RPEVTSVTIK ATYREDIIRF RLLLSSGIFK LKEEVAKRLK  960
LEMGTFDIKY LDDDHEWVLI ACDADLQECV DISRSSGSNV VRLLVHDIMP NLGSSCESSG  1020
E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773779.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1U7WGL5	0.0	A0A1U7WGL5_NICSY; protein NLP7
STRING	XP_009773779.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]