PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759539.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 292aa    MW: 33010.3 Da    PI: 8.0279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759539.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-19109159256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_009759539.1 109 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 159
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.69E-17108167No hitNo description
PROSITE profilePS5103223.301109166IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22109166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-31109167IPR001471AP2/ERF domain
SMARTSM003805.2E-36109172IPR001471AP2/ERF domain
PfamPF008472.8E-13110159IPR001471AP2/ERF domain
PRINTSPR003673.5E-10110121IPR001471AP2/ERF domain
PRINTSPR003673.5E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNTIQENNNT MSSIFDEGAQ IRSSLSQLLL TSGTNTLDSI FSHCQETNQM TCPVFEPLGS  60
SVYLRQRDLL QKFCQENITN ISIPATSTTF PFHNSLYAQS YRFPEKKKLY RGVRQRHWGK  120
WVAEIRLPQN RMRVWLGTYD TAEAAAYAYD RAAYKLRGEY ARLNFPNIRD PSKLGFGDSE  180
KMNAVKNAVD AKIQAICQKV KREKAKKGAK KKSENESKVK ETMDSSSSTS SLVGDVISPS  240
VSEDGLWKSE NSDCSIFGDC LKEPLMESEF DSCSLARMPS FDPELIWEVL AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21106166263ATERF1
3gcc_A5e-21106166263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759539.10.0PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W29e-75ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1U7VB750.0A0A1U7VB75_NICSY; ethylene-responsive transcription factor ERF061
STRINGXP_009759539.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-56ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]