PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf23239g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 406aa    MW: 45034.6 Da    PI: 5.4102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf23239g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33272328258
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                               +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers edp+vv++tYeg+Hnh
  Niben101Scf23239g00002.1 272 EDGYRWRKYGQKAVKNSPFPRSYYRCTNQKCSVKKRVERSYEDPSVVITTYEGQHNH 328
                               8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-34256328IPR003657WRKY domain
SuperFamilySSF1182901.12E-28263328IPR003657WRKY domain
PROSITE profilePS5081130.125266328IPR003657WRKY domain
SMARTSM007741.8E-39271330IPR003657WRKY domain
PfamPF031061.0E-26272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFDNNPFYYD YMGTGGINNA FSNFFGDQNP SISDQIPTNT QTLHQDFDPS SYMSTLTECL  60
HGSMDYNSLS NVLGMSCSSS EVVCPPLDQE SSRKNSAEIP LTPNSLVSSS SSEAGGGINN  120
AFSNFFGDQN PSISDQIPTN TQTLHQDFDP SSYMSTLTEC LHGSMDYNSL SNVLGMSCSS  180
SEVVCPPLDQ ESSRKNSAEI PLTPNSLVSS SSSEAGGEED SSKSKKDLQA KDQCENGDDK  240
SKKGSKAKRK GEKKQKEPRF AFMTKSEIDN LEDGYRWRKY GQKAVKNSPF PRSYYRCTNQ  300
KCSVKKRVER SYEDPSVVIT TYEGQHNHLR GNAAAAMLSP SFLSSSQLIP QDVLFAQMLT  360
NPTNQNLPIN YSVYNYHQQH QHQPQLAPEY GLFQDMVASL IHKREP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-252643281074Probable WRKY transcription factor 4
2lex_A4e-252643281074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615724.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_016468091.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A1S3ZUL51e-180A0A1S3ZUL5_TOBAC; probable WRKY transcription factor 71
STRINGXP_009615724.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-47WRKY DNA-binding protein 28