PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf21026g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 869aa    MW: 95986.4 Da    PI: 5.3544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf21026g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.61.1e-110734313374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lLl+cAe+v+ ++l  a++lL ++ el+sp g++ +R+aayf+eAL++r+ +s  + y+ l+ ++ + ++s + ++al+ ++ +
  Niben101Scf21026g00010.1  73 GLLLQCAECVAMENLDDASNLLPEIAELSSPFGSSAERVAAYFAEALSTRIISSHLRFYSPLNLKTLTLTHSRKLFTALQSYNTI 157
                               58*********************************************************************************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP++kfsh taNqaI++a+ ge++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++
  Niben101Scf21026g00010.1 158 SPLIKFSHYTANQAIYQALVGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSVKITGVGS----SMELLESTGRRLTEFANSF 238
                               **************************************************************....******************* PP

                      GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                               g++fef++l  k  +  +l++L vk gE ++Vn+++  h l+d ++s       + kl++ l+Pk++++veq+++h +++Fl rf
  Niben101Scf21026g00010.1 239 GLSFEFKPLEGKIGNITDLSQLGVKMGEIIVVNWMH--HCLYDITGSDLG----TFKLLNLLRPKLITIVEQDLSH-GGNFLGRF 316
                               ********988888888******************9..777766777777....8999999***************.789***** PP

                      GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                               +eal+yysalfdsl  +l+ es er++vE++l+g ei+n+va  g +r+ +   +e+W + l++ GF +v+ls + a+q +lll 
  Niben101Scf21026g00010.1 317 VEALHYYSALFDSLGDGLSVESVERHTVEQQLFGCEIRNIVAVGGPKRTGEVP-VERWGDELKRIGFFAVSLSGTPAAQSSLLLG 400
                               ***********************************************887765.9****************************** PP

                      GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Niben101Scf21026g00010.1 401 MFP-KGYTLVEENGCLKLGWKDLSLLTASAWQ 431
                               ***.9**************************6 PP
2GRAS361.61.1e-1105088663374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                                lLl+cAe+v+ ++l  a++lL ++ el+sp g++ +R+aayf+eAL++r+ +s  + y+ l+ ++ + ++s + ++al+ ++ +
  Niben101Scf21026g00010.1 508 GLLLQCAECVAMENLDDASNLLPEIAELSSPFGSSAERVAAYFAEALSTRIISSHLRFYSPLNLKTLTLTHSRKLFTALQSYNTI 592
                               58*********************************************************************************** PP

                      GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                               sP++kfsh taNqaI++a+ ge++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++
  Niben101Scf21026g00010.1 593 SPLIKFSHYTANQAIYQALVGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSVKITGVGS----SMELLESTGRRLTEFANSF 673
                               **************************************************************....******************* PP

                      GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                               g++fef++l  k  +  +l++L vk gE ++Vn+++  h l+d ++s       + kl++ l+Pk++++veq+++h +++Fl rf
  Niben101Scf21026g00010.1 674 GLSFEFKPLEGKIGNITDLSQLGVKMGEIIVVNWMH--HCLYDITGSDLG----TFKLLNLLRPKLITIVEQDLSH-GGNFLGRF 751
                               ********988888888******************9..777766777777....8999999***************.789***** PP

                      GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                               +eal+yysalfdsl  +l+ es er++vE++l+g ei+n+va  g +r+ +   +e+W + l++ GF +v+ls + a+q +lll 
  Niben101Scf21026g00010.1 752 VEALHYYSALFDSLGDGLSVESVERHTVEQQLFGCEIRNIVAVGGPKRTGEVP-VERWGDELKRIGFFAVSLSGTPAAQSSLLLG 835
                               ***********************************************887765.9****************************** PP

                      GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Niben101Scf21026g00010.1 836 MFP-KGYTLVEENGCLKLGWKDLSLLTASAWQ 866
                               ***.9**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.13445412IPR005202Transcription factor GRAS
PfamPF035143.8E-10873431IPR005202Transcription factor GRAS
PROSITE profilePS5098554.134480847IPR005202Transcription factor GRAS
PfamPF035143.8E-108508866IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MLQSLQFSLS ASASNSSSSM PSKRSIADFT PVHSDEDPLH LTKRPRNNEE EQFEEGEDQL  60
PVDTDSVGLR LLGLLLQCAE CVAMENLDDA SNLLPEIAEL SSPFGSSAER VAAYFAEALS  120
TRIISSHLRF YSPLNLKTLT LTHSRKLFTA LQSYNTISPL IKFSHYTANQ AIYQALVGED  180
HVHVIDLDIM QGLQWPGLFQ ILSSRSRKLR SVKITGVGSS MELLESTGRR LTEFANSFGL  240
SFEFKPLEGK IGNITDLSQL GVKMGEIIVV NWMHHCLYDI TGSDLGTFKL LNLLRPKLIT  300
IVEQDLSHGG NFLGRFVEAL HYYSALFDSL GDGLSVESVE RHTVEQQLFG CEIRNIVAVG  360
GPKRTGEVPV ERWGDELKRI GFFAVSLSGT PAAQSSLLLG MFPKGYTLVE ENGCLKLGWK  420
DLSLLTASAW QPLVIMLQSL QFSLSASASN SSSSMPSKRS IADFTPVHSD EDPLHLTKRP  480
RNNEEEQFEE GEDQLPVDTD SVGLRLLGLL LQCAECVAME NLDDASNLLP EIAELSSPFG  540
SSAERVAAYF AEALSTRIIS SHLRFYSPLN LKTLTLTHSR KLFTALQSYN TISPLIKFSH  600
YTANQAIYQA LVGEDHVHVI DLDIMQGLQW PGLFQILSSR SRKLRSVKIT GVGSSMELLE  660
STGRRLTEFA NSFGLSFEFK PLEGKIGNIT DLSQLGVKMG EIIVVNWMHH CLYDITGSDL  720
GTFKLLNLLR PKLITIVEQD LSHGGNFLGR FVEALHYYSA LFDSLGDGLS VESVERHTVE  780
QQLFGCEIRN IVAVGGPKRT GEVPVERWGD ELKRIGFFAV SLSGTPAAQS SLLLGMFPKG  840
YTLVEENGCL KLGWKDLSLL TASAWQPYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1476586713380Protein SCARECROW
5b3h_A1e-1476586712379Protein SCARECROW
5b3h_D1e-1476586712379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804953.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-162SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1U7YPD80.0A0A1U7YPD8_NICSY; scarecrow-like protein 23
STRINGXP_009804953.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-153GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]