PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14929g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 332aa    MW: 37389.7 Da    PI: 7.9305
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14929g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-33187244259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK+vk+s+fpr+YYrCt+++C+vkk+vers edp++v++tYeg+Hnh+
  Niben101Scf14929g00007.1 187 EDGYRWRKYGQKSVKNSPFPRNYYRCTTQKCNVKKRVERSYEDPSIVITTYEGQHNHH 244
                               8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-34171246IPR003657WRKY domain
SuperFamilySSF1182903.79E-29178246IPR003657WRKY domain
PROSITE profilePS5081131.582181246IPR003657WRKY domain
SMARTSM007741.2E-38186245IPR003657WRKY domain
PfamPF031066.5E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSNNPFYHDY MGTEGINTFP SFGENPTSDY DHTPPNNIQI PHHQFVPSSY MTLTECLHSS  60
MDYNTLSNAF GMSCSSSEVV CPQNDRHDYS SRKSSVVSST EPALDSPLEG TRVEIPPTTN  120
SSISSTSNEA GGEEDSSKSK KLMQGKEYHE EGDDKSKKES KAKKKGEKKP KEPRFAFMTK  180
SEIDNLEDGY RWRKYGQKSV KNSPFPRNYY RCTTQKCNVK KRVERSYEDP SIVITTYEGQ  240
HNHHCPATLR GNAASMLSPS FLSSSHLLPN FPPNIFAHML NPTSNQNLLI ILPIIIINSK  300
VKNMPHVSIN LSHPSHAYHN FNSMVSGLEF RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261792471078Probable WRKY transcription factor 4
2lex_A4e-261792471078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766292.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_016432826.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ28e-52WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A1S3WZ640.0A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71
TrEMBLA0A1U7VE170.0A0A1U7VE17_NICSY; probable WRKY transcription factor 71
STRINGXP_009766292.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-46WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]