PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08326g00020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1514aa MW: 168993 Da PI: 5.2891

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08326g00020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.3e-29	610	661	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Niben101Scf08326g00020.1 610 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 661 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	595	681	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-26	613	661	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.31E-21	914	1001	No hit	No description
SMART	SM00666	5.7E-21	915	997	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.5E-24	915	996	No hit	No description
PROSITE profile	PS51745	21.672	915	997	IPR000270	PB1 domain
CDD	cd06407	4.10E-35	916	996	No hit	No description
Pfam	PF00564	6.1E-15	916	996	IPR000270	PB1 domain
SuperFamily	SSF55781	4.37E-5	1091	1174	IPR029016	GAF domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1514 aa Download sequence Send to blast
MSEPEEEMNH MFRSKPMDFL TRPPTTPSTT TTTTQHTVAV ENQNQREPSL MMDLDLDLDA 60 SWSFDQIFAA AAASNNPMSP FLVSTTASEQ PCSPLWAFSD ENEDNKPSTG NALSTANTGD 120 HEAAAEPLSV TDDKKRIPPP IMGLTPLDYL DGSCIIKERM TQALRYLKES TGERLLAQVW 180 APVKNGGRYM LTTSGQPFVL DPDCNGLHQY RMVSLMYMFA VDGETDGVLG LPGRVYRKKL 240 PEWTPNVQYY SSKEFPRLNH ALHYNVRGTL ALPVFEPSGQ SCVGVLEIIM TSQKINYAPE 300 VDRVCKALEA VNLKSSEILD HPNTQICNEG RQNALVEILE ILTAVCETYK LPLAQTWVPC 360 RHRSVLADGG GLKKSCSSFD GSCMGQVCMS TTDVSFYVVD AHMWGFREAC AEHHLQKGQG 420 VAGRAYASQK SCFCEDIRLF CKTEYPLVHY ARLFGLSSCF AICLRSTYTG NDDYILEFFL 480 PPNDGDYNDQ LALLNSLLLT MKQHFRSLRV ASGEELEHDW GSVEVIKASM EDKLGSRLES 540 VPTTKSLPQL DSVVNERVPP DLMEEQESPV ELNVAKVAEG VNGTAEAHNH ASFSENKGTG 600 KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKINK 660 VNRSLSKLKR VIESVQGADG TFSLTSLAPN SLPVAVGSIS WPAGMNGSPC NASEYPEEKN 720 ELSNQGMPGS HEEAEPSNQL LESRIIGNEE LSPKQNDFER EGSHRSRTGS GSREESAGTP 780 TSHGSCQGSP FPANESSHQN ELVNSPTQES SVKIGGSSEP ARPTTGEINL STAFLMPGPY 840 IPEHTQQLFG GMLVEDAGSS HDLRNLCPAG DAMFDDRVPE YSWTNPPCSN GIAKDQVSLP 900 AENMPLFSTR PEVTSVTIKA TYREDIIRFR LLLSSGLFKL KEEVAKRLKL EVGTFDIKYL 960 DDDHEWVLIA CDADLQEHVD ISISSGSNVV RLLVHDIMPN LGSSCESSAV KQKIKAALQR 1020 IETSQVILLQ FWGLEKIEGR HFLTTSGQPF GLRYLYKGLC WYRKHCQGYK YSVNNKGESG 1080 EQGTEKVHLF GPPARVFQEK LPESSTHVGY YTNEEFPMRD HAVRCGVRTY LALPVFEPLG 1140 KQCVGVIELV TVWKGGYLTY EVEKVLNALE VQVGKQSERE EIKRMLKIVR ETHKLPFVRV 1200 WIPCKNLEMD QNGMYRGCTE HVISASNEVY YVADEEMDAN DHVYDDYYYD DMLCFRDISK 1260 LQPLQKDQGV VGKAFSSGEL CYCENITEFS IIEYPLVHYA RWCGLASSFA ICLKTGDEVY 1320 ILELFLPPDN GDPKMLLGSI LSTMGQHFQN FKFGSGQELG HDSSVQVIKA SSDKNVDYFH 1380 ICQTRESPFM PEVLRDEERR NWLMGGDENH TEKEAISECM FQNSVDNGQQ QIMVQSDVLH 1440 TDIQVTSEKQ CISVTHLQKE SRTRTKDSVN YDDLKQHFNK NLSDAAESLQ ESMVFEGGHY 1500 QNERTHAASQ IASH

Sequence ? help Back to Top

Protein Sequence Length: 1514 aa Download sequence Send to blast

MSEPEEEMNH MFRSKPMDFL TRPPTTPSTT TTTTQHTVAV ENQNQREPSL MMDLDLDLDA  60
SWSFDQIFAA AAASNNPMSP FLVSTTASEQ PCSPLWAFSD ENEDNKPSTG NALSTANTGD  120
HEAAAEPLSV TDDKKRIPPP IMGLTPLDYL DGSCIIKERM TQALRYLKES TGERLLAQVW  180
APVKNGGRYM LTTSGQPFVL DPDCNGLHQY RMVSLMYMFA VDGETDGVLG LPGRVYRKKL  240
PEWTPNVQYY SSKEFPRLNH ALHYNVRGTL ALPVFEPSGQ SCVGVLEIIM TSQKINYAPE  300
VDRVCKALEA VNLKSSEILD HPNTQICNEG RQNALVEILE ILTAVCETYK LPLAQTWVPC  360
RHRSVLADGG GLKKSCSSFD GSCMGQVCMS TTDVSFYVVD AHMWGFREAC AEHHLQKGQG  420
VAGRAYASQK SCFCEDIRLF CKTEYPLVHY ARLFGLSSCF AICLRSTYTG NDDYILEFFL  480
PPNDGDYNDQ LALLNSLLLT MKQHFRSLRV ASGEELEHDW GSVEVIKASM EDKLGSRLES  540
VPTTKSLPQL DSVVNERVPP DLMEEQESPV ELNVAKVAEG VNGTAEAHNH ASFSENKGTG  600
KKSERKRGKA EKTISLEVLQ QYFAGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKINK  660
VNRSLSKLKR VIESVQGADG TFSLTSLAPN SLPVAVGSIS WPAGMNGSPC NASEYPEEKN  720
ELSNQGMPGS HEEAEPSNQL LESRIIGNEE LSPKQNDFER EGSHRSRTGS GSREESAGTP  780
TSHGSCQGSP FPANESSHQN ELVNSPTQES SVKIGGSSEP ARPTTGEINL STAFLMPGPY  840
IPEHTQQLFG GMLVEDAGSS HDLRNLCPAG DAMFDDRVPE YSWTNPPCSN GIAKDQVSLP  900
AENMPLFSTR PEVTSVTIKA TYREDIIRFR LLLSSGLFKL KEEVAKRLKL EVGTFDIKYL  960
DDDHEWVLIA CDADLQEHVD ISISSGSNVV RLLVHDIMPN LGSSCESSAV KQKIKAALQR  1020
IETSQVILLQ FWGLEKIEGR HFLTTSGQPF GLRYLYKGLC WYRKHCQGYK YSVNNKGESG  1080
EQGTEKVHLF GPPARVFQEK LPESSTHVGY YTNEEFPMRD HAVRCGVRTY LALPVFEPLG  1140
KQCVGVIELV TVWKGGYLTY EVEKVLNALE VQVGKQSERE EIKRMLKIVR ETHKLPFVRV  1200
WIPCKNLEMD QNGMYRGCTE HVISASNEVY YVADEEMDAN DHVYDDYYYD DMLCFRDISK  1260
LQPLQKDQGV VGKAFSSGEL CYCENITEFS IIEYPLVHYA RWCGLASSFA ICLKTGDEVY  1320
ILELFLPPDN GDPKMLLGSI LSTMGQHFQN FKFGSGQELG HDSSVQVIKA SSDKNVDYFH  1380
ICQTRESPFM PEVLRDEERR NWLMGGDENH TEKEAISECM FQNSVDNGQQ QIMVQSDVLH  1440
TDIQVTSEKQ CISVTHLQKE SRTRTKDSVN YDDLKQHFNK NLSDAAESLQ ESMVFEGGHY  1500
QNERTHAASQ IASH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507149.1	0.0	PREDICTED: protein NLP7-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A3Q7HUP0	0.0	A0A3Q7HUP0_SOLLC; Uncharacterized protein
STRING	Solyc08g082750.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]