PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07289g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1516aa MW: 169925 Da PI: 6.0029

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07289g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.3e-29	605	656	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Niben101Scf07289g00001.1 605 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 656 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	590	676	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-26	608	656	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-22	829	916	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.0E-25	830	911	No hit	No description
SMART	SM00666	2.7E-22	830	912	IPR000270	PB1 domain
PROSITE profile	PS51745	22.4	830	912	IPR000270	PB1 domain
Pfam	PF00564	1.7E-16	831	911	IPR000270	PB1 domain
CDD	cd06407	3.63E-37	831	911	No hit	No description
SuperFamily	SSF54277	4.21E-16	1322	1409	No hit	No description
PROSITE profile	PS51745	17.943	1328	1410	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.5E-15	1328	1408	No hit	No description
SMART	SM00666	5.2E-9	1328	1410	IPR000270	PB1 domain
Pfam	PF00564	1.9E-11	1329	1408	IPR000270	PB1 domain
SuperFamily	SSF54277	3.08E-16	1420	1508	No hit	No description
PROSITE profile	PS51745	17.943	1426	1508	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.5E-15	1426	1506	No hit	No description
SMART	SM00666	5.2E-9	1426	1508	IPR000270	PB1 domain
Pfam	PF00564	1.9E-11	1427	1506	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1516 aa Download sequence Send to blast
MSKPEEEMNH MFRSKPKDFL PPPPPPTTQH TVAVENQNQR EPSLMMDLDL DLDASWSFDQ 60 IFAAAAASNN PTTPFLISTT ASEQPCSPLW AFSDENEDNK PSTGNALSTA NTTGDHEAAA 120 EALSVTDDKK RIPPPVMGLT PLDCMDGSCI IKERMTQALR YLKESTGERV LAQVWAPVKN 180 GGRYMLTTSG QPFVLDPDCN GLHQYRMVSL MYMFAVDGET DGVLGLPGRV YRKKLPEWTP 240 NVQYYSSKEF PRLNHALHYN VRGTLALPVF EPSGQSCVGV LEIIMTSQKI NYAPEVDRVC 300 KALEAVNLKS SEILDHPNTQ ICNEGRQNAL VEILEILTAV CETYKLPLAQ TWVPCRHRSV 360 LADGGGLKKS CSSFDGSCMG QVCMSTTDVS FYVVDAHMWG FREACAEHHL QKGQGVAGRA 420 YASQKSCFCE DIRLFCKTEY PLVHYARLFG LSSCFAICLR STYTGNDDYI LEFFLPPNDG 480 DYNDQLALLN SLLLTMKQQF RSLSVASGEE LEHDWGSVEV IKASMEDKLG SRLESVPTTE 540 SLSQPANVVN GRVPPDLMEE QQSPVELNVA KVVEGINGTA EAHNHASFSE NKGTGKKSER 600 KRGKAEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL 660 SKLKRVIESV QGADGTFSLT SLAPNSLPVA VGSISWPAGM NGSPCNASEY HEEKNELSNH 720 GMPGSHEEAE PSNQMLESRI IGNGELSPKQ NGFVREGSHR SRTGSGSREE SAGTPTSHGS 780 CQGSPFPANE SSHQNDLVNS PTQESPVKVD GSSEPAQSMP QFSTRPEVTS VTIKATYRED 840 IIRFRLLLSY GLFKLKEEVS KRLKLEVGTF DIRYLDDDHE WVLITCDADL QECVDISRSS 900 GSNVVRLLVH DIMPNLGSSC ESSAVKQKIK AALQRTETSQ VILLQFWGLE KIEGRHFLTT 960 SGQPFGLRYL YKGLCWYRKH CQGYKYSANN KGESAEQGAE KVQLFGPPAR VFQEKLPESS 1020 THVRYYTNEE FPMRDHAVRC GGWTYLALPV FEPIGKNCVG VIELVTVWKG GYLTYEVEKV 1080 LNALEVQPGK QSERGKIKRM LKIVRETHKL PFVRVWIRCK NLEMDQNGMY RGCTEHVISA 1140 SNEVYYVADE EMDANDHVYD DYYYDDMLCF RDISKLQPLQ KDQGLCYCEN ITEFSIIEYP 1200 LVHYARWCGL TSSFAICLKN GDEAYILELF LPPDNGDPKI LLGLILSTMG QHFQNFKFAS 1260 GQELEHDSSV HRLQIRMWII FNQTRESPFM PEVLPVEEIR NRLTAGNANH MEKEATATHT 1320 NHVNSSSSIT VKATYGEDMM KFNLYSFSRK EDLDTELAKR LQLPIGKFRI KYMDEDTDYI 1380 WIACDDDLRD CFNNALSLGK NTIKMLVLPA AITTATHTNH VNSSSSITVK ATYGEDMMKF 1440 NLYSFSRKED LDTELAKRLQ LPIGKFRIKY MDEDTDYIWI ACDDDLRDCF NNALSLGKNT 1500 IKMLVLPAAI SHPLEL

Sequence ? help Back to Top

Protein Sequence Length: 1516 aa Download sequence Send to blast

MSKPEEEMNH MFRSKPKDFL PPPPPPTTQH TVAVENQNQR EPSLMMDLDL DLDASWSFDQ  60
IFAAAAASNN PTTPFLISTT ASEQPCSPLW AFSDENEDNK PSTGNALSTA NTTGDHEAAA  120
EALSVTDDKK RIPPPVMGLT PLDCMDGSCI IKERMTQALR YLKESTGERV LAQVWAPVKN  180
GGRYMLTTSG QPFVLDPDCN GLHQYRMVSL MYMFAVDGET DGVLGLPGRV YRKKLPEWTP  240
NVQYYSSKEF PRLNHALHYN VRGTLALPVF EPSGQSCVGV LEIIMTSQKI NYAPEVDRVC  300
KALEAVNLKS SEILDHPNTQ ICNEGRQNAL VEILEILTAV CETYKLPLAQ TWVPCRHRSV  360
LADGGGLKKS CSSFDGSCMG QVCMSTTDVS FYVVDAHMWG FREACAEHHL QKGQGVAGRA  420
YASQKSCFCE DIRLFCKTEY PLVHYARLFG LSSCFAICLR STYTGNDDYI LEFFLPPNDG  480
DYNDQLALLN SLLLTMKQQF RSLSVASGEE LEHDWGSVEV IKASMEDKLG SRLESVPTTE  540
SLSQPANVVN GRVPPDLMEE QQSPVELNVA KVVEGINGTA EAHNHASFSE NKGTGKKSER  600
KRGKAEKTIS LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL  660
SKLKRVIESV QGADGTFSLT SLAPNSLPVA VGSISWPAGM NGSPCNASEY HEEKNELSNH  720
GMPGSHEEAE PSNQMLESRI IGNGELSPKQ NGFVREGSHR SRTGSGSREE SAGTPTSHGS  780
CQGSPFPANE SSHQNDLVNS PTQESPVKVD GSSEPAQSMP QFSTRPEVTS VTIKATYRED  840
IIRFRLLLSY GLFKLKEEVS KRLKLEVGTF DIRYLDDDHE WVLITCDADL QECVDISRSS  900
GSNVVRLLVH DIMPNLGSSC ESSAVKQKIK AALQRTETSQ VILLQFWGLE KIEGRHFLTT  960
SGQPFGLRYL YKGLCWYRKH CQGYKYSANN KGESAEQGAE KVQLFGPPAR VFQEKLPESS  1020
THVRYYTNEE FPMRDHAVRC GGWTYLALPV FEPIGKNCVG VIELVTVWKG GYLTYEVEKV  1080
LNALEVQPGK QSERGKIKRM LKIVRETHKL PFVRVWIRCK NLEMDQNGMY RGCTEHVISA  1140
SNEVYYVADE EMDANDHVYD DYYYDDMLCF RDISKLQPLQ KDQGLCYCEN ITEFSIIEYP  1200
LVHYARWCGL TSSFAICLKN GDEAYILELF LPPDNGDPKI LLGLILSTMG QHFQNFKFAS  1260
GQELEHDSSV HRLQIRMWII FNQTRESPFM PEVLPVEEIR NRLTAGNANH MEKEATATHT  1320
NHVNSSSSIT VKATYGEDMM KFNLYSFSRK EDLDTELAKR LQLPIGKFRI KYMDEDTDYI  1380
WIACDDDLRD CFNNALSLGK NTIKMLVLPA AITTATHTNH VNSSSSITVK ATYGEDMMKF  1440
NLYSFSRKED LDTELAKRLQ LPIGKFRIKY MDEDTDYIWI ACDDDLRDCF NNALSLGKNT  1500
IKMLVLPAAI SHPLEL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468309.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A3Q7HUP0	0.0	A0A3Q7HUP0_SOLLC; Uncharacterized protein
STRING	Solyc08g082750.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]