PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05797g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 391aa    MW: 44533.8 Da    PI: 6.929
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05797g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP145.14.9e-451222762133
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssas 71 
                               +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ a+ el ++               +     
  Niben101Scf05797g01004.1 122 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAVTELSENipqkdysdgnkivnsN----- 201
                               79**************************************************************8777665555444221..... PP

                       TCP  72 eceaesssssasnsssg..................kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                     ssss++++s++                   +++ +  + +++ s+  ++n++k esr karararert+ekm+ik
  Niben101Scf05797g01004.1 202 ------SSSSEDQKSESlmsewevlsrweenskneGKERGKDINMNDRLSEMMQNNPHKrESRDKARARARERTKEKMMIK 276
                               ......111111122223344444445555544456666666667777777777888889******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-45122274IPR005333Transcription factor, TCP
PROSITE profilePS5136934.736124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.806255272IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MFPSGNSQEP FNPYTSKALL EKSFTYNHHQ NPSSSSKQED LASFLNFPSP FLDDHNNELP  60
LNQILSHQHH QDQEAGDHHH VKESNFTHNI SCETSKEEMS IEAAKTSSKK RNLSATPPRR  120
RTGKKDRHSK ICTAQGVRDR RVRLSLHIAR KFFDLQDMLG FDKASKTIEW LFSKSNNAVT  180
ELSENIPQKD YSDGNKIVNS NSSSSEDQKS ESLMSEWEVL SRWEENSKNE GKERGKDINM  240
NDRLSEMMQN NPHKRESRDK ARARARERTK EKMMIKGLDK KCNKQWYETN PNSSTTNILD  300
HLGSSSNSGF LDQEYSNNNS YNNTSVNQEK DSPLEANSQS LEHQFISNYY ANSSAAVGGL  360
DSGNCFLGFL GNWEYAPMAY ADLPGYGNLI Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258528.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A314LFU70.0A0A314LFU7_NICAT; Transcription factor tcp12
STRINGXP_009757682.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP domain protein 12