PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05678g02016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 329aa    MW: 36661.4 Da    PI: 10.1554
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05678g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1258e-39912122129
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 
                               ++kkdrhski T++g RdRRvRls+ +a++fFdLqd+L fdk+skt++WL++++k ai elt  + ++a +         ++ ++
  Niben101Scf05678g02016.1  91 PVKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLRFDKPSKTLDWLFTKSKLAIEELTTGQMKTA-SL--------NEPKK 166
                               68**************************************************************77777.12........11122 PP

                       TCP  87 sg....kaaksaakskksqksaasalnlakesrakarararertrek 129
                               ++    +++++     ++++++++  +l +esrakarararert  k
  Niben101Scf05678g02016.1 167 IPscinSECEDVVIA-RAKQEEEAIVHLVRESRAKARARARERTIRK 212
                               223332555555544.4444444479*****************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-3492179IPR005333Transcription factor, TCP
PROSITE profilePS5136933.62993151IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.544195212IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MFPSGNSNGN PILQCSIPSF HSSNSSFHGL NGNQILLHQH QDQVSTHYLA ANNGYLIDNS  60
SSAMMFANNV IHNRSNNQEI GCPLNKMMKK PVKKDRHSKI LTSQGHRDRR VRLSIGVARK  120
FFDLQDMLRF DKPSKTLDWL FTKSKLAIEE LTTGQMKTAS LNEPKKIPSC INSECEDVVI  180
ARAKQEEEAI VHLVRESRAK ARARARERTI RKVWSQIEAK INSSSVVVKE QTKIDEIKEM  240
IHGSVLADSK NIKSSSSTLG FHHLNLSGTE EARANSNYNS SSSSTRNWDH DVNRTITNSS  300
LSAVMATIST SSQESMGLIS LQANLKVGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235310.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1J6KTR90.0A0A1J6KTR9_NICAT; Transcription factor tcp1
STRINGXP_009793865.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.26e-29TCP family protein