PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05178g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 379aa MW: 44018 Da PI: 7.2764

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05178g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.6e-23	74	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ ++++w++ +++l+H Niben101Scf05178g00002.1 74 DFYNMYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKRSGAN-----HPRPETRTGCPAMLVIKLVDSKRWRIVEVKLQH 153 6*******************999*************99988.....9**************************** PP FAR1 86 nHela 90 nH+++ Niben101Scf05178g00002.1 154 NHPVS 158 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-21	74	159	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	271	307	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-4	280	304	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	282	309	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MTKFKLRLGQ SGCGRMEAVC LNSDPVFDDC EEYEDEEDCS VEEHDDGVHE KDSKKESPQP 60 TIGLEFGSFD EAYDFYNMYG KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKRSGAN 120 HPRPETRTGC PAMLVIKLVD SKRWRIVEVK LQHNHPVSPE VRRFYKSHKK MILADKKQQE 180 SVPITEVHTI KLYRTSIDAA CNGLQKIKEK DSRFPLSKIF TKEIFKKFQA EVEGIYSCFN 240 TRQVNINGPI MTFVVKERVE SEGSEEEVKQ FEVLYETTQV EIRCICSLFN FKGYLCRHAL 300 NVLNYNGVEE IPSQYILPRW DKDYKRKFPV ESGLCHTDVN NPVELYNILH KHVMQVVEEG 360 AQSEEHYKAV FREVEALLS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MTKFKLRLGQ SGCGRMEAVC LNSDPVFDDC EEYEDEEDCS VEEHDDGVHE KDSKKESPQP  60
TIGLEFGSFD EAYDFYNMYG KEQGFGIRVS NSWFRSKRKE RYRAKLSCSS AGFKKRSGAN  120
HPRPETRTGC PAMLVIKLVD SKRWRIVEVK LQHNHPVSPE VRRFYKSHKK MILADKKQQE  180
SVPITEVHTI KLYRTSIDAA CNGLQKIKEK DSRFPLSKIF TKEIFKKFQA EVEGIYSCFN  240
TRQVNINGPI MTFVVKERVE SEGSEEEVKQ FEVLYETTQV EIRCICSLFN FKGYLCRHAL  300
NVLNYNGVEE IPSQYILPRW DKDYKRKFPV ESGLCHTDVN NPVELYNILH KHVMQVVEEG  360
AQSEEHYKAV FREVEALLS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019232379.1	1e-126	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_019232380.1	1e-127	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	7e-53	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0B0MXF2	1e-176	A0A0B0MXF2_GOSAR; Far1-related sequence 6-like protein
STRING	XP_009801241.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	8e-45	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]