PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04995g09003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 330aa MW: 37644.2 Da PI: 5.2518

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04995g09003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s Niben101Scf04995g09003.1 10 KIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58 69**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.73	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.46E-39	2	78	No hit	No description
SuperFamily	SSF55455	3.92E-30	2	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGRVKLQIRK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPERDRGR LHNQEHLQRA IAKLKCETDR TYQAASPASV DSHIETQLED 120 MDRRLRMYEG DLCEITTVCE AQYREEILQE TLKQVQARKQ VLEETYNSPQ AQTTTQPQMD 180 FASQNVNVVN NVATSDSIPN TSSNTFMDWV PHSQRDPHVQ ILNFLDSNGL LPFRDEADQR 240 MENMLPPSLT QLHAPNVSAV VTDHLSPNNR FENDPQRATL SFEGIIDVNN APWPPLYPAG 300 NDPFPETQPR ERALLELFLS QLTPVNQDHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	1e-15	2	70	1	68	Myocyte-specific enhancer factor 2A
6bz1_A	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_B	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_C	2e-15	1	80	1	79	MEF2 CHIMERA
6bz1_D	2e-15	1	80	1	79	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262549.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	2e-47	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A314L9F1	0.0	A0A314L9F1_NICAT; Agamous-like mads-box protein agl104
STRING	XP_009790826.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	8e-50	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]