PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04019g05011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 449aa    MW: 48665.8 Da    PI: 8.2334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04019g05011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.5e-1385109327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtGtCk+G++CkF+H++
  Niben101Scf04019g05011.1  85 EPMCQYYLRTGTCKFGASCKFHHPK 109
                               789********************96 PP
2zf-CCCH33.76.4e-11131155327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C+++++tG+Ck+G +Ck++H++
  Niben101Scf04019g05011.1 131 EIECSYYLKTGHCKFGITCKYHHPQ 155
                               568********************97 PP
3zf-CCCH37.44.2e-12285311127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++++tG Ck+G++C+++H+p
  Niben101Scf04019g05011.1 285 PGQPTCQYYMKTGDCKFGSSCRYHHPP 311
                               57899********************97 PP
4zf-CCCH27.84.3e-09332356226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +  +C+f++  G+Ck+G  CkF H+
  Niben101Scf04019g05011.1 332 GVQPCSFYLLKGFCKFGRACKFDHP 356
                               6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.73282110IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-682109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-685109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-687108IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-988109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957128156IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5128155IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5132155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239284312IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6284311IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6288312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4290310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84330358IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6330357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5332359IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4334355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MELYGRSTGS NGSQSDHQSE WVPVEQETGL DGGFLTMLII NAEVGVMGQG NLPGKAWCTR  60
LLVLYENWGG KMQLERVEFP ERLGEPMCQY YLRTGTCKFG ASCKFHHPKN LGGSLSNIPL  120
NTHGYPLRPG EIECSYYLKT GHCKFGITCK YHHPQTAGIS VPAPARPFYP TVQSLPAPPE  180
EYNSASTGLR VARLPLLPGS YVPSAYGPVL LHPGVVTIQN WSPYSGLVSP ALSPGAQPSS  240
GVTSIYGISQ LASSTHAFAG TYSPLHSAAS PSGKTQKEKS FPERPGQPTC QYYMKTGDCK  300
FGSSCRYHHP PDWIASKTNC AISPLGLPLR PGVQPCSFYL LKGFCKFGRA CKFDHPLGTV  360
QYSSSASSLP DLPIAPYMLR SSFAFAPALL PELQAGFVSV SKVDAASLSR PSSSLKVQLE  420
LKCVLHLCFS MFGMMFPFVE IEGEIDLTN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226769.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-144C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KQX50.0A0A314KQX5_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-146C3H family protein