PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03850g03026.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1058aa MW: 115622 Da PI: 5.839

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03850g03026.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	652	703	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Niben101Scf03850g03026.1 652 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 703 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.518	638	723	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	655	703	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-19	962	1048	No hit	No description
SMART	SM00666	1.4E-20	963	1045	IPR000270	PB1 domain
PROSITE profile	PS51745	18.561	963	1045	IPR000270	PB1 domain
Pfam	PF00564	1.3E-15	964	1044	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-20	964	1044	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence Send to blast
MSEPEEKMTS KNLPPKSKEF SPPPPQQPPH TAAERESTTM MMDLDLDIDA SWSFDQIFAA 60 AAAVSSTPAS PFLPCSPLWA FPDDIDEKPA GNSFSGSFRL SGHPRFGATS AVSSNPTSPF 120 LPCSPLWAFS DDIDEKPAGN SFSGALRLSG HPRFDTDDPE AITETVSVNT DKGRLPSPIL 180 ELAPRDYPNG SCIMKERMTQ ALRYFKESTG ERVLAQVWAP VKDAGRYVLT TSGQPFVLDP 240 DCNGLHQYRT VSLMYMFAAD GETGGVLGLP GRVFRLKLPE WTPNVQYYSS KEFPRLDHAL 300 HYNVRGTLAL PVFEPSGQSC LGVLELIMTS QKINYATEVD KVCKALETVN LKSSEILDHP 360 NTQVYVMGYM NQICNEGRQN ALVEILEILT AVCETYQLPL AQTWVPCRHR SVLADGGGLK 420 KSCSSFDGSC MGQICMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG RAYASQKSCF 480 CEDITQFCKT EYPLVHYARL FGLTSSFAIC LRSSHTGNDD YILEFFLPPN SGDYSDQQAL 540 LNSLLFTMKQ HFRSLSIASG GVLKHDWSSV EIIKASMEEK IDAKPESVPA QKSLPQPIRL 600 PNGRKHLDRL GEQQFSVESD VAKGAGSKSG TGEAPNHISP SDTKQTRKRG KAEKTISLEV 660 LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KCVIESVQGT 720 EGAFTLTSLA QNSLPAAVGS ISWPACASGS NQPSSPLSKP SVFPEEKNEF SNHGTPESHE 780 EAELSNQMLG GRVTRKEEFT LQNGFLHAEG SHKSRTGSVS REESTGTPTS QGSCQGSPSA 840 GNEFSPQNDL VNSPAREACM KVGGSLEAAH QTTTENNLAA AFLLPRPFIP ERAQEPFGGM 900 LVEDAGSSHD LRNLCSAGDA LVDECVPEYG LPHPPFSDKI AKDPVYVPAD TTPHYSAWPE 960 VTFVTIKAAY REDIIRFRLF LNSGIVKVNE EVAKRLKLEL GTFDIKYRDD DLELVSISCD 1020 ADLQECVDIS LSSGSSIVRL FVHDIMSNLG SSCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence Send to blast

MSEPEEKMTS KNLPPKSKEF SPPPPQQPPH TAAERESTTM MMDLDLDIDA SWSFDQIFAA  60
AAAVSSTPAS PFLPCSPLWA FPDDIDEKPA GNSFSGSFRL SGHPRFGATS AVSSNPTSPF  120
LPCSPLWAFS DDIDEKPAGN SFSGALRLSG HPRFDTDDPE AITETVSVNT DKGRLPSPIL  180
ELAPRDYPNG SCIMKERMTQ ALRYFKESTG ERVLAQVWAP VKDAGRYVLT TSGQPFVLDP  240
DCNGLHQYRT VSLMYMFAAD GETGGVLGLP GRVFRLKLPE WTPNVQYYSS KEFPRLDHAL  300
HYNVRGTLAL PVFEPSGQSC LGVLELIMTS QKINYATEVD KVCKALETVN LKSSEILDHP  360
NTQVYVMGYM NQICNEGRQN ALVEILEILT AVCETYQLPL AQTWVPCRHR SVLADGGGLK  420
KSCSSFDGSC MGQICMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG RAYASQKSCF  480
CEDITQFCKT EYPLVHYARL FGLTSSFAIC LRSSHTGNDD YILEFFLPPN SGDYSDQQAL  540
LNSLLFTMKQ HFRSLSIASG GVLKHDWSSV EIIKASMEEK IDAKPESVPA QKSLPQPIRL  600
PNGRKHLDRL GEQQFSVESD VAKGAGSKSG TGEAPNHISP SDTKQTRKRG KAEKTISLEV  660
LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KCVIESVQGT  720
EGAFTLTSLA QNSLPAAVGS ISWPACASGS NQPSSPLSKP SVFPEEKNEF SNHGTPESHE  780
EAELSNQMLG GRVTRKEEFT LQNGFLHAEG SHKSRTGSVS REESTGTPTS QGSCQGSPSA  840
GNEFSPQNDL VNSPAREACM KVGGSLEAAH QTTTENNLAA AFLLPRPFIP ERAQEPFGGM  900
LVEDAGSSHD LRNLCSAGDA LVDECVPEYG LPHPPFSDKI AKDPVYVPAD TTPHYSAWPE  960
VTFVTIKAAY REDIIRFRLF LNSGIVKVNE EVAKRLKLEL GTFDIKYRDD DLELVSISCD  1020
ADLQECVDIS LSSGSSIVRL FVHDIMSNLG SSCESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261440.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A314LA83	0.0	A0A314LA83_NICAT; Protein nlp7
STRING	XP_009803234.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]