PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02972g04001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 997aa MW: 108883 Da PI: 5.18

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02972g04001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.2e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Niben101Scf02972g04001.1 591 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 642 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	594	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.54E-20	901	987	No hit	No description
PROSITE profile	PS51745	20.444	902	984	IPR000270	PB1 domain
SMART	SM00666	2.2E-22	902	984	IPR000270	PB1 domain
Pfam	PF00564	8.0E-17	903	983	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-21	903	983	No hit	No description
CDD	cd06407	2.48E-30	903	983	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
EFSPSPPQQP PHTAADREFT ATMMDLDLDI DASWSFDQIF AAAAAVSSNP TSPFLPCSPL 60 WAFSDDIDEK PAGNSFSGAL RLSGHPRFDN DDPEATTETV SVNADKGRLP SPVLELAPRD 120 YPNGSCIIKE RMTQALRYFK ESTGERVLAQ VWAPVKDAGR YVLTTSGQPF VLDPDCNGLH 180 QYRTVSLMYM FAADGETGGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL DHALHYNVRG 240 TLALPVFEPS GQSCLGVLEL IMTSQKINYA AEVDKVCKAL ETVNLKSSEI LDHPNTQVYV 300 MGYMNQICNE GRQNALVEIL EILTAVCETY QLPLAQTWVP CRHRSVLADG GGLKKSCSSF 360 DGSCMGQICM STTDVAFYVV DAHMWGFREA CAEHHLQKGQ GVGGRAYASQ KSCFCEDITQ 420 FCKTEYPLVH YARLFGLTSC FAICLRSTHT GNDDYILEFF LPPNSGDYSD QQALLNSLLL 480 TMKQHFRSLS IASGEELEHD WSSVEIIKAS MEEKIDVKPE SVPAPKSLPQ PTRLPNGWTH 540 LDPLGEQQFS AESDVAKGAG SKSSTGEAPN LIPPADNKPT GKKSERKRGK AEKTISLEVL 600 QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGTE 660 GAFTLTSLAP NSLPAAVGSI SWPACASGSN LPSSPLSKPS VFPEEKNEFS NHGTPESHEE 720 AEPSNQMPGG RVTRKEEFTL QNGFLCAEGS HKSRTWSVSR EESAGTPTSQ GSCQGSPSAG 780 NEFSPQNNLV NSPAREACMK VGGSVEAAHQ TTTENNLAAA FLIPRPFIPE RAQEPFGGML 840 VEDAGSSHDL RNLCPAGDAL VDECVPEYGL PNPPISDKIA KEPTYVPADM TPQYSAWPEV 900 TFVTIKASYR EDIIRFRLCL NSGIVKLNEE VAKRLKLELG TFDIKYRDDD LELVSISCDA 960 DLQECVDISL SSGSSIVRLL VHDIMSNLGS SCESSGK

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

EFSPSPPQQP PHTAADREFT ATMMDLDLDI DASWSFDQIF AAAAAVSSNP TSPFLPCSPL  60
WAFSDDIDEK PAGNSFSGAL RLSGHPRFDN DDPEATTETV SVNADKGRLP SPVLELAPRD  120
YPNGSCIIKE RMTQALRYFK ESTGERVLAQ VWAPVKDAGR YVLTTSGQPF VLDPDCNGLH  180
QYRTVSLMYM FAADGETGGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL DHALHYNVRG  240
TLALPVFEPS GQSCLGVLEL IMTSQKINYA AEVDKVCKAL ETVNLKSSEI LDHPNTQVYV  300
MGYMNQICNE GRQNALVEIL EILTAVCETY QLPLAQTWVP CRHRSVLADG GGLKKSCSSF  360
DGSCMGQICM STTDVAFYVV DAHMWGFREA CAEHHLQKGQ GVGGRAYASQ KSCFCEDITQ  420
FCKTEYPLVH YARLFGLTSC FAICLRSTHT GNDDYILEFF LPPNSGDYSD QQALLNSLLL  480
TMKQHFRSLS IASGEELEHD WSSVEIIKAS MEEKIDVKPE SVPAPKSLPQ PTRLPNGWTH  540
LDPLGEQQFS AESDVAKGAG SKSSTGEAPN LIPPADNKPT GKKSERKRGK AEKTISLEVL  600
QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGTE  660
GAFTLTSLAP NSLPAAVGSI SWPACASGSN LPSSPLSKPS VFPEEKNEFS NHGTPESHEE  720
AEPSNQMPGG RVTRKEEFTL QNGFLCAEGS HKSRTWSVSR EESAGTPTSQ GSCQGSPSAG  780
NEFSPQNNLV NSPAREACMK VGGSVEAAHQ TTTENNLAAA FLIPRPFIPE RAQEPFGGML  840
VEDAGSSHDL RNLCPAGDAL VDECVPEYGL PNPPISDKIA KEPTYVPADM TPQYSAWPEV  900
TFVTIKASYR EDIIRFRLCL NSGIVKLNEE VAKRLKLELG TFDIKYRDDD LELVSISCDA  960
DLQECVDISL SSGSSIVRLL VHDIMSNLGS SCESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803234.1	0.0	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_016478548.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S4APX5	0.0	A0A1S4APX5_TOBAC; protein NLP7-like isoform X1
TrEMBL	A0A1U7YVL8	0.0	A0A1U7YVL8_NICSY; protein NLP7-like isoform X1
STRING	XP_009803234.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]