PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02853g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 510aa    MW: 57292.8 Da    PI: 5.208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02853g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-12178199526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C++f++tG Ck+G++CkF+H+
  Niben101Scf02853g02001.1 178 DCPYFMKTGVCKFGSNCKFNHP 199
                               7********************8 PP
2zf-CCCH31.33.5e-10223247327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C++++ +G CkyG  CkF+H++
  Niben101Scf02853g02001.1 223 QIECKYYLTSGGCKYGKACKFNHSR 247
                               568********************95 PP
3zf-CCCH40.93.5e-13268292226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ++++C++++rtG CkyG++C+F+H+
  Niben101Scf02853g02001.1 268 GEKECPYYMRTGSCKYGSNCRFHHP 292
                               7899********************9 PP
4zf-CCCH19.91.3e-06404430127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f +tG Cky  +CkF+H++
  Niben101Scf02853g02001.1 404 PGQPDCSYFIKTGDCKYKFNCKFHHPK 430
                               5789*********************96 PP
5zf-CCCH36.21e-11452476327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +  C+f++r+G+Ck+G+ CkF H++
  Niben101Scf02853g02001.1 452 QTVCSFYSRYGICKFGPACKFDHPE 476
                               678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-6172200IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629173201IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10178199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5179198IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389220248IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7224247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5226248IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624266294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7268293IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-11268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5272291IPR000571Zinc finger, CCCH-type
SMARTSM003560.065403430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962403431IPR000571Zinc finger, CCCH-type
PfamPF146082.5408429No hitNo description
SuperFamilySSF902296.67E-5408432IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6449476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131449477IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5450477IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9452476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4454476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEEAIEQQQI QNQNQSPKHT QEELGFESQT PQTTSLSPSD LNIQNPNQNQ PNENDDEDEM  60
AMQIISEELR DLVLNQALDK EREKEDLHHP DPEESGKINE NEVENVEGND EGWGDVGEYG  120
DYHCDYDNRS GSVNGNDNEN DGEKENGYEG DSKEGGGFNA NNRTKRKFIY PLRPDAQDCP  180
YFMKTGVCKF GSNCKFNHPS RRKYQGTKEK GKQREESQER PGQIECKYYL TSGGCKYGKA  240
CKFNHSRDKG SISPIAEFNF LGLPIRPGEK ECPYYMRTGS CKYGSNCRFH HPDPTTVAGA  300
DRSSGYNNGG AVPVQAASHP AASSRSSPRA LSDTAPYVPM MYPPTQGIPS PNTEWNGYQA  360
PVYPAAEKRL PTPPAFGMNN PATKNNYYPR PLQPLLVEEY PERPGQPDCS YFIKTGDCKY  420
KFNCKFHHPK SQVSKANSST LNEKGLPLRP DQTVCSFYSR YGICKFGPAC KFDHPENYVG  480
SASSTEYGFD QPQQSQMSLG WQGRELEVDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468903.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3
SwissprotQ9STM41e-117C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3ZX290.0A0A1S3ZX29_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-114C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]