PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02736g07004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22822.2 Da    PI: 9.5416
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02736g07004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien+snrqvt+skRrngi KKA+E+ vLCda+v++ii+++tgk++ey+s
  Niben101Scf02736g07004.1  9 KRIENSSNRQVTYSKRRNGIVKKAKEITVLCDAKVSLIIYGNTGKMHEYCS 59
                              79***********************************************96 PP
2K-box80.63.7e-2771165195
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++L+++l++i +k++e+l++  ++ q  e+
  Niben101Scf02736g07004.1  71 YQKASGRRLWDAKHENLSNEIDRIKKENDSMQVNLRHLKGEDINSLNYKELMVMEEALQNGLSSISAKQSEILRMVRKNDQILEE 155
                               8999********************************************************************************* PP

                     K-box  86 elqeenkaLr 95 
                               e+++ + aL 
  Niben101Scf02736g07004.1 156 EHKQLQYALV 165
                               ***9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-36296IPR002100Transcription factor, MADS-box
CDDcd002653.05E-38280No hitNo description
PRINTSPR004048.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.0E-1782162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.17784170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIVK KAKEITVLCD AKVSLIIYGN TGKMHEYCSP  60
STTIADMLDG YQKASGRRLW DAKHENLSNE IDRIKKENDS MQVNLRHLKG EDINSLNYKE  120
LMVMEEALQN GLSSISAKQS EILRMVRKND QILEEEHKQL QYALVSHDNI TGHIYMYKHE  180
KLSKLILSLG YYLFKEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16159159MEF2C
5f28_B6e-16159159MEF2C
5f28_C6e-16159159MEF2C
5f28_D6e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803901.11e-112PREDICTED: floral homeotic protein PMADS 2
RefseqXP_016483128.11e-112PREDICTED: floral homeotic protein PMADS 2-like
RefseqXP_019258175.11e-112PREDICTED: floral homeotic protein PMADS 2
SwissprotQ074741e-109MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A1S4B2W11e-111A0A1S4B2W1_TOBAC; floral homeotic protein PMADS 2-like
TrEMBLA0A1U7YPI61e-111A0A1U7YPI6_NICSY; floral homeotic protein PMADS 2
TrEMBLA0A314LGA01e-111A0A314LGA0_NICAT; Floral homeotic protein globosa
STRINGXP_009803901.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]