PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02474g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 507aa    MW: 58854.7 Da    PI: 6.6446
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02474g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.1e-2284167189
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               ++Yn YA+evGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leH
  Niben101Scf02474g03002.1  84 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEH 163
                               69*****************************************9988.....99******************************* PP

                      FAR1  86 nHel 89 
                               nH l
  Niben101Scf02474g03002.1 164 NHLL 167
                               **87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1984167IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.841368404IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6379406IPR006564Zinc finger, PMZ-type
PfamPF044343.5E-4380400IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEEASLDSEV DLTGQGSGRL QEIESDGLDD QNSDQIESDE LFSQSGGQIE SDALDDQDGF  60
TDWQKQFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS  120
QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYKSIKKTVA  180
GNKKKLDANC DAEVRTIKLY RALVIDAASW RFMIQRFGVG DHEWLLSLYD DRAKWAPVYL  240
KDTFFAGMAT ARSSETLTAF FDKYLHKQTP LKEFLDKYEL ALQKKYKEEA VADTESRNLN  300
PELKTRCSFE LQLSKVYTRE IFKRFQLEVE EMYSCFSTTQ LHVDGQMVIF LVKERVLGEG  360
NRREIRDYEV LYNRAAAEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPP KHALCVLNFN  420
GVEEIPPKYI LSRWKKDYKR LHASDLESSS TESTEHVQRF SQLYRSALQV VEEGVISLDH  480
YKVALNAFEE SLTRVHHIEE KLNKNSL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766776.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_016487947.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ41e-136FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2P5YJ110.0A0A2P5YJ11_GOSBA; Uncharacterized protein
STRINGXP_009766776.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-136FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]