PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01827g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24657.2 Da    PI: 9.088
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01827g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien+snrqvt+skRrngilKKA+E+SvLCda+v+viif+stgk++e+ss
  Niben101Scf01827g00003.1  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASTGKMHEFSS 59
                              79***********************************************96 PP
2K-box91.11.9e-3069164196
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               y+k +g++l++ak+e++++e++k+kk ++n+q e+Rhl+Ged++sL++++L+ Le++L+++l++iR+k+nell+++ +++q +e+
  Niben101Scf01827g00003.1  69 YHKLTGRRLWDAKYENMDNEINKVKKDNDNMQIELRHLKGEDITSLNHRDLMMLEDALDNGLTSIRNKQNELLRMMRKKTQSMEE 153
                               78999999***************************************************************************** PP

                     K-box  86 elqeenkaLrk 96 
                               e+++ n +Lr+
  Niben101Scf01827g00003.1 154 EQDQLNCQLRQ 164
                               *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-36294IPR002100Transcription factor, MADS-box
CDDcd002655.66E-42278No hitNo description
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1781162IPR002487Transcription factor, K-box
PROSITE profilePS5129713.91882173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD ARVSVIIFAS TGKMHEFSST  60
SLVDILDQYH KLTGRRLWDA KYENMDNEIN KVKKDNDNMQ IELRHLKGED ITSLNHRDLM  120
MLEDALDNGL TSIRNKQNEL LRMMRKKTQS MEEEQDQLNC QLRQLEIASM NRNMGEIGEV  180
FQQRENEYQT QMPFAFRVQP MQPNLQERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18169169MEF2C
5f28_B4e-18169169MEF2C
5f28_C4e-18169169MEF2C
5f28_D4e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264307.11e-150PREDICTED: floral homeotic protein GLOBOSA
SwissprotQ034161e-150GLOB_TOBAC; Floral homeotic protein GLOBOSA
TrEMBLA0A314L6L71e-149A0A314L6L7_NICAT; Floral homeotic protein globosa
STRINGXP_009588903.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-77MIKC_MADS family protein