PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01826g07012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 778aa    MW: 88375.9 Da    PI: 8.45
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01826g07012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000946287123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                              y C    C++sFs+k +L  H ++ +
  Niben101Scf01826g07012.1 62 YHCDleGCSMSFSTKQELSLHKKNvC 87
                              889999***************99866 PP
2zf-C2H211.70.0007986109223
                               EET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                               +Cp   C+k F ++ +L++H r+H
  Niben101Scf01826g07012.1  86 VCPveGCKKKFFSHKYLVQHRRVH 109
                               69999*****************99 PP
3zf-C2H211.90.00069145171123
                               EEET..TTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                               y C+   Cg++F+  s++ rH r+  H
  Niben101Scf01826g07012.1 145 YICTesGCGQTFRFVSDFSRHKRKtgH 171
                               899999****************99666 PP
4zf-CCCH38.42e-12362383526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C++f++tG Ck+G++CkF+H+
  Niben101Scf01826g07012.1 362 DCPYFMKTGVCKFGSNCKFNHP 383
                               7********************8 PP
5zf-CCCH30.94.6e-10407431327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C++++ +G CkyG  CkF+H++
  Niben101Scf01826g07012.1 407 QIECKYYLTSGGCKYGKACKFNHSK 431
                               568********************95 PP
6zf-CCCH40.25.8e-13452476226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ++++C++++rtG CkyG++C+F+H+
  Niben101Scf01826g07012.1 452 GEKECPYYMRTGSCKYGSNCRFHHP 476
                               7899********************9 PP
7zf-CCCH19.22.1e-06588614127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f +tG Cky  +CkF+H++
  Niben101Scf01826g07012.1 588 PGQPDCSYFIKTGDCKYKFNCKFHHPK 614
                               5789*********************96 PP
8zf-CCCH19.22.1e-06679705127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f +tG Cky  +CkF+H++
  Niben101Scf01826g07012.1 679 PGQPDCSYFIKTGDCKYKFNCKFHHPK 705
                               5789*********************96 PP
9zf-CCCH35.51.7e-11727751327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +  C+f++r+G+Ck+G+ CkF H++
  Niben101Scf01826g07012.1 727 QTVCSFYSRYGICKFGPACKFDHPE 751
                               678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-45383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355116284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-584108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01285109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.57285114IPR007087Zinc finger, C2H2
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-9101141No hitNo description
Gene3DG3DSA:3.30.160.607.9E-10109137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014115139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741115144IPR007087Zinc finger, C2H2
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SuperFamilySSF576672.55E-8133167No hitNo description
Gene3DG3DSA:3.30.160.601.9E-9138168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2145171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949145176IPR007087Zinc finger, C2H2
PROSITE patternPS000280147171IPR007087Zinc finger, C2H2
SuperFamilySSF902293.4E-6356384IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629357385IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10362383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5363382IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4404431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455404432IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7408431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5409432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5410432IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7450477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624450478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6452477IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10452476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5456475IPR000571Zinc finger, CCCH-type
SMARTSM003560.065587614IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962587615IPR000571Zinc finger, CCCH-type
SMARTSM003560.065678705IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962678706IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6724751IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131724752IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5725752IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9727751IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MPKPSSESLV KPRPTPIKQQ NESKKAEKGS KVKIPSANSN SKKDPVMKAN TSKKMKDKEG  60
EYHCDLEGCS MSFSTKQELS LHKKNVCPVE GCKKKFFSHK YLVQHRRVHM DDRPLKCPWK  120
GCKMTFKWAW ARTEHIRVHT GARPYICTES GCGQTFRFVS DFSRHKRKTG HVSKKGREEP  180
TMEEAIEQQQ IQNQNQNQNQ SPKHTQEELG FESQTPQTSL LPSDLTIENP NQNQPNKNDD  240
EDETAMQIIC EELRDLVLNQ ALDKEREKED FHHLDPEENG KINENEVENV EGNDEGWGDV  300
GEYGDYHYDD ENRSGSVDGN GNENDGEKEN GYEGDSKEGG GFNANNRIKR KFIYPLRPDA  360
QDCPYFMKTG VCKFGSNCKF NHPSRRKYQG IKEKGKQREE SQERPGQIEC KYYLTSGGCK  420
YGKACKFNHS KEKGSISPIG EFNFLGLPIR PGEKECPYYM RTGSCKYGSN CRFHHPDPTT  480
VAGADRSSGY NNGGAIPVQA APHPAASSWS SPRALNDTAP YVPMMYPPTQ GIPSPNTEWN  540
GYQAPVYPTA EKRLPTPPAF GMNNPATKTN YYPRPLQPLL VEEYPERPGQ PDCSYFIKTG  600
DCKYKFNCKF HHPKSRVSKA NSSTLNEKGL PLRPAPVYPT AEKRLPTPPA FGMNNPATKT  660
NYYPRPLQPL LVEEYPERPG QPDCSYFIKT GDCKYKFNCK FHHPKSRVSK ANSSTLNEKG  720
LPLRPDQTVC SFYSRYGICK FGPACKFDHP ENYEYGFDQP QQSQMSLGWQ GRELEVDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-636017521136Lysine-specific demethylase REF6
6a58_A7e-636017521136Lysine-specific demethylase REF6
6a59_A7e-636017521136Lysine-specific demethylase REF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468903.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3
SwissprotQ9STM44e-98C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3ZX290.0A0A1S3ZX29_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-96C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]