PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01555g04002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 332aa    MW: 36739.7 Da    PI: 9.4962
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01555g04002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.4e-201459147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEdell  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Niben101Scf01555g04002.1 14 KGPWSPEEDELLQTLVEKHGPRNWSLISKSVP-GRSGKSCRLRWCNQ 59
                              79******************************.***********985 PP
2Myb_DNA-binding56.18.4e-1868110347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +T+eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Niben101Scf01555g04002.1  68 TFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110
                               69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.276964IPR017930Myb domain
SuperFamilySSF466892.94E-3211107IPR009057Homeodomain-like
SMARTSM007175.0E-181362IPR001005SANT/Myb domain
PfamPF002491.3E-191459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-261567IPR009057Homeodomain-like
CDDcd001673.85E-171658No hitNo description
SMARTSM007172.7E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129421.7866115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2368114IPR009057Homeodomain-like
CDDcd001671.56E-1268111No hitNo description
PfamPF002494.9E-1568110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWSLI SKSVPGRSGK SCRLRWCNQL  60
SPQVEHRTFT PEEDETIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSMSE  120
DLSFETPQQP LKRSSSVGPS TNFSSHMNPG SPSGSDLSDS SLSGFPHPLV YRPVPRTGGI  180
FPLPPSVQQI ETAPFIPDPP TSLCLSLSGS GTRETLNQTA QQTQQTQPPQ SPPLPPPPPL  240
TLPPVDKPVP PPTAAFMAQV PQTKQSYDFC AAALPKSGEK QFFSPEFLRV LQDMIRKEVR  300
NYMSGVEHNG IYMQTDAIRN AVVKRIGISK IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-40131143104C-Myb DNA-Binding Domain
1msf_C7e-40131143104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237070.10.0PREDICTED: transcription factor MYB44-like
TrEMBLA0A1J6K0140.0A0A1J6K014_NICAT; Transcription factor myb44
STRINGXP_009795719.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-72myb domain protein 73