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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00996g04023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25636.6 Da PI: 7.4299 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74 | 1.9e-23 | 187 | 225 | 2 | 40 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkver 40 +Dgy+WrKYGqK vk+s+fpr+YYrCt+++C+vkk+ve+ Niben101Scf00996g04023.1 187 EDGYRWRKYGQKAVKNSPFPRNYYRCTTQKCNVKKRVEK 225 8************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-22 | 171 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-20 | 178 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.228 | 181 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-17 | 186 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-17 | 187 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSKNPFYHDY MGTEGINTFP FFGENPGSNY DHPPPNNIQN PHQQFVPSSY MTLTECLHSS 60 MDYTTLSSAF GMSCSSCEVV CPQVDHHDYS SRKISVVSAT EPVIDSPLEG TDVEIPPTTN 120 SSISSISNEA GGEEDSSKSK KLMQGKECQE EGDDKSRKES KAKKKGEKKP KEPRFAFMTK 180 SEIDNLEDGY RWRKYGQKAV KNSPFPRNYY RCTTQKCNVK KRVEKII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-17 | 176 | 225 | 7 | 56 | Probable WRKY transcription factor 4 |
2lex_A | 2e-17 | 176 | 225 | 7 | 56 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766292.1 | 1e-138 | PREDICTED: probable WRKY transcription factor 71 | ||||
Refseq | XP_016432826.1 | 1e-138 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1S3WZ64 | 1e-137 | A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1U7VE17 | 1e-137 | A0A1U7VE17_NICSY; probable WRKY transcription factor 71 | ||||
STRING | XP_009766292.1 | 1e-138 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 4e-31 | WRKY DNA-binding protein 28 |