PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g099410.1
Common NameMTR_4g099410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 548aa    MW: 60733.2 Da    PI: 7.225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g099410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.41.5e-112046935
             GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                     TplWR+gp  ++ LCnaCG ++r kg+
  Medtr4g099410.1 20 TPLWRNGPPEKPILCNACGSRWRTKGT 46
                     ********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00221658IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-61850No hitNo description
PfamPF003202.2E-91946IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-82046IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.61E-112060No hitNo description
PfamPF139192.2E-8295378IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLKSLPFVYT SKYKMFHLGT PLWRNGPPEK PILCNACGSR WRTKGTLANY TPLHARTDPV  60
DFEDQRVSRL KIVSLNKNKE VKLVKRKQNY DNAYAASGWF TPEYNQGFQK AVDEDTSNRS  120
SSGSAISNSE SCVQFGGTDA SDLTGPSQSV VWDTAAPSKK RTCAGRLKHS SVEKLTQDLC  180
TILHEQQQSC FSASSEEELL YDSETPMVSV EIGHGSMLIR HPSSIARDEE SEASSLSVDN  240
KQCLMNEAYS CYGSIPRLSD YTGMNFSSQG VAKVRNSAGP RLQQEQLVWD KSQLEKLEVL  300
GNHDSSLCSI DLNDVVNYEA FSRNLTNEEQ QQLLKYLPVI DTAKFPDSIK IMFDSFQFKE  360
ELTYFQKLLE EGVFDISLLR GDPEDCKTSK RLALSNLSKS KCVEHYNFLK KGGNKDGKRN  420
GMESPAMASS NVANVKRLRV SQNQNFPELK TTMRSPKRVI VKAGTGGKEA VDGSSISPKS  480
LFAFPRNGGL HMLDSLNFVD ESSDQDLLLE FPSNNSFPQA ELLLPSSSLV AQGSTSSSSV  540
YSHVTRP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.160370.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g099410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637991.10.0GATA transcription factor 26
SwissprotQ8W4H11e-128GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A072URD10.0A0A072URD1_MEDTR; GATA transcription factor-like protein
STRINGXP_004508957.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-129GATA transcription factor 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]