PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g084750.1
Common NameMTR_4g084750
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22632.9 Da    PI: 8.9864
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g084750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1964118256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Lee F+kn++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Medtr4g084750.1  64 RKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSK 118
                      78889************************************************98 PP
2HD-ZIP_I/II117.86e-3864152189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl+keq++lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Medtr4g084750.1  64 RKKLRLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 152
                      69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-1955121IPR009057Homeodomain-like
PROSITE profilePS5007117.18460120IPR001356Homeobox domain
SMARTSM003891.4E-1662124IPR001356Homeobox domain
CDDcd000864.02E-1563121No hitNo description
PfamPF000464.9E-1764118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1864124IPR009057Homeodomain-like
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
SMARTSM003407.8E-22120163IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-10120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAVLPTSSSN LELTISIPGF ASSPISFLPS SSVKKLDVNR VTIEEEWMAL EEEEESSVNG  60
DTPRKKLRLT KEQSHLLEES FRKNHTLNPK QKECLAMQLK LRPRQVEVWF QNRRARSKLK  120
QTEMECEYLK RWFGSLTEQN RRLQREVEEL RAMKVGPPTV LSPHSSEPLP ASTLSMCPRC  180
ERVTTNTTAA VAAEKISH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g084750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416170.0BT141617.1 Medicago truncatula clone JCVI-FLMt-6H7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456835.11e-142homeobox-leucine zipper protein HOX3
SwissprotQ8S9N63e-79ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBLI3SMB91e-141I3SMB9_MEDTR; Homeobox associated leucine zipper protein
STRINGGLYMA20G01770.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-72homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhao P, et al.
    ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.
    Sci Rep, 2017. 7: p. 45492
    [PMID:28358040]