PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g109340.1
Common NameMTR_3g109340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 359aa    MW: 40490.3 Da    PI: 8.1893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g109340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-54221491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL +k+++++++  ++i+++d++k+ePw+Lp k+k +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkd+e+++
  Medtr3g109340.1  22 LPPGFRFHPTDEELITCYLINKISDSSFTG-KAITDIDLNKSEPWELPGKAKMGEKEWYFFNMRDRKYPTGVRTNRATNTGYWKTTGKDREIFD 114
                      79*************************999.88***************99999****************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Medtr3g109340.1 115 SvTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 149
                      989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6219171IPR003441NAC domain
PROSITE profilePS5100560.35922171IPR003441NAC domain
PfamPF023651.6E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEKERTKDIE LMEESGGKEE TLPPGFRFHP TDEELITCYL INKISDSSFT GKAITDIDLN  60
KSEPWELPGK AKMGEKEWYF FNMRDRKYPT GVRTNRATNT GYWKTTGKDR EIFDSVTSEL  120
VGMKKTLVFY KGRAPRGEKS NWVMHEYRIH SKSTFRTNKQ DEWVICRIFK KSGSGKKYPC  180
NSSSNNNTRA GLNPYSMHEI GPNNINLISM PPPPMMQYLH EDFPSAPRNF LYGRNQHNNN  240
YINCSTTAPM MQYSQLNYPA SSATVGEGFS ISGLNLNLGS GGGGGATTTT QTTLRPMQHS  300
PHFAHATMNS YVDADQNIIN NIGVLETMSN SNNDSNGNRY MGMENCINGL DTYWPNSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-562117716171NO APICAL MERISTEM PROTEIN
1ut4_B4e-562117716171NO APICAL MERISTEM PROTEIN
1ut7_A4e-562117716171NO APICAL MERISTEM PROTEIN
1ut7_B4e-562117716171NO APICAL MERISTEM PROTEIN
3swm_A4e-562117719174NAC domain-containing protein 19
3swm_B4e-562117719174NAC domain-containing protein 19
3swm_C4e-562117719174NAC domain-containing protein 19
3swm_D4e-562117719174NAC domain-containing protein 19
3swp_A4e-562117719174NAC domain-containing protein 19
3swp_B4e-562117719174NAC domain-containing protein 19
3swp_C4e-562117719174NAC domain-containing protein 19
3swp_D4e-562117719174NAC domain-containing protein 19
4dul_A4e-562117716171NAC domain-containing protein 19
4dul_B4e-562117716171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g109340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354130.0AC135413.43 Medicago truncatula clone mth2-16n19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603583.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
TrEMBLG7J2W50.0G7J2W5_MEDTR; NAC transcription factor-like protein
STRINGAES738340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-100NAC domain containing protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]