PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g079990.2
Common NameMTR_2g079990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 383aa    MW: 43493.1 Da    PI: 7.2156
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g079990.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.6e-52161411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++
  Medtr2g079990.2  16 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-QIIAEIDLYKFDPWILPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITN 108
                      79***************************9.89***************7777799***********************************9999 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Medtr2g079990.2 109 -EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 141
                      .999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6312151IPR003441NAC domain
PROSITE profilePS5100558.14416192IPR003441NAC domain
PfamPF023655.1E-2617141IPR003441NAC domain
SuperFamilySSF1019413.66E-63180192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIMGIQDKDP LAQLSLPPGF RFYPTDEELL VQYLCRKVAG HHFSLQIIAE IDLYKFDPWI  60
LPSKAIFGEK EWYFFSPRDR KYPNGTRPNR VAGSGYWKAT GTDKIITNEG RKVGIKKALV  120
FYVGKAPKGT KTNWIMHEYR LLDSSRNNGG TKVLYTFIFF YHAIIIITTL IYLYFVVELQ  180
LDDWVLCRIY KKNSSAQKPI PNGVISSREY TQYSNGSSSS SSSHLDDVLE SLPQIDDRCF  240
KLPHVNSLRT TQHRQQEEEE KLNLQNNNFM DWSNSSSILN TVTGFQEGQT QGMMNFSGCN  300
DLYVPTLCQM DSSVITEKTS NISVHPTEEE VQSGAKANQV ENSSGFFQRG SNDFTQGMGY  360
ANPVDPFGFR YPVQPVGFGF QQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10431984171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10431984171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10431984171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10431984171NO APICAL MERISTEM PROTEIN
3swm_A1e-10431987174NAC domain-containing protein 19
3swm_B1e-10431987174NAC domain-containing protein 19
3swm_C1e-10431987174NAC domain-containing protein 19
3swm_D1e-10431987174NAC domain-containing protein 19
3swp_A1e-10431987174NAC domain-containing protein 19
3swp_B1e-10431987174NAC domain-containing protein 19
3swp_C1e-10431987174NAC domain-containing protein 19
3swp_D1e-10431987174NAC domain-containing protein 19
4dul_A1e-10431984171NAC domain-containing protein 19
4dul_B1e-10431984171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.52250.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00012PBMTransfer from AT1G52890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g079990.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375640.0BT137564.1 Medicago truncatula clone JCVI-FLMt-16H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464754.10.0NAC domain-containing protein 72
SwissprotQ9SQL01e-127JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A072VKX20.0A0A072VKX2_MEDTR; NAC transcription factor-like protein
STRINGXP_004487680.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-117NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]