PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g016490.1
Common NameMTR_1g016490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 525aa    MW: 59220.1 Da    PI: 5.8916
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g016490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084434811854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Medtr1g016490.1 443 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 481
                      5887779******************************88 PP
2BELL75.21e-24314384172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r+++++k+++Ll ll++Vd +Y+q+ ++++tv+s+F+a+++l++ ++++++A k++Sr ++ L+++i+++i
  Medtr1g016490.1 314 QRHAVESKQSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDP-QIHAHFAVKTVSRLYKDLRERISKHI 384
                      68999****************************************.***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-23238382IPR006563POX domain
PfamPF075262.9E-26244381IPR006563POX domain
PROSITE profilePS5007111.029422485IPR001356Homeobox domain
CDDcd000862.60E-10425485No hitNo description
SMARTSM003894.1E-5425489IPR001356Homeobox domain
SuperFamilySSF466894.71E-15427494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-25428491IPR009057Homeodomain-like
PfamPF059201.2E-14442481IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MENDVYTAQM NMEDITQHLT QKPLIHYYSF DLNNQNNIIN GIPILSGGEQ DQHVDGSFMN  60
QVTIADNSFV TSQQGRTIVE NPSNLIVNNN DFSVPARIGL QENLEAIVPY IFNNWHDTSN  120
SNPLCATFGD NNSYVNKFLK AQESNVGTEF MSYSPIGNID PNGWQSSNVA NLTNLAYSSS  180
NCSNELSLSL ATSPTSVQCS EISCSDLTHS MNGTRSGLEQ ASCSSMELSM SLGNDKHVKF  240
SPAILGSRYL AVIQEILVQI ATFSFENLDE INYSGSGVRG RGNKSTSSNT TKRRIGINRD  300
ESPMSEAYAD SSLQRHAVES KQSQLLMLLQ MVDSQYSQCL DEIHTVVSAF HAATELDPQI  360
HAHFAVKTVS RLYKDLRERI SKHILSMGSN FNSSWSEEDK ELSVETSFIQ KQWALQQLKR  420
KDQLWRPQRG LPERSVSVLR DWMFQNFLHP YPKDAEKHLL AIKSGLTRSQ VSNWFINARV  480
RLWKPLIEEM YAEMNRRKAC RNEGENESSE RSRISINNQM FDMN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g016490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743040.0AC174304.20 Medicago truncatula clone mth2-108f8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589026.10.0homeobox protein ATH1
RefseqXP_024629714.10.0homeobox protein ATH1
SwissprotP487311e-108ATH1_ARATH; Homeobox protein ATH1
TrEMBLG7IB930.0G7IB93_MEDTR; BEL1-like homeodomain protein
STRINGAES592770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-102homeobox gene 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]