PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr0022s0430.1

Common Name

MTR_0022s0430

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Nin-like

Protein Properties

Length: 858aa MW: 96207.1 Da PI: 5.7623

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr0022s0430.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.4e-29	570	621	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l+ yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Medtr0022s0430.1 570 AEKSISLEVLQDYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 621 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	560	641	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-26	574	621	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.28E-23	760	847	No hit	No description
SMART	SM00666	2.1E-24	762	844	IPR000270	PB1 domain
PROSITE profile	PS51745	21.718	762	844	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-25	763	843	No hit	No description
CDD	cd06407	3.15E-34	763	843	No hit	No description
Pfam	PF00564	3.4E-18	763	843	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MQKSEEENHD LPQKSKPLDE NVFSMDYDID FETSWPLDHI SNSMHPFFLQ NISEQPFSPI 60 WTFSDDDHNI AASGNNKNII TENRVENDDK HKRVTPHIGL PPLQNPHGYC LIKERMTQAL 120 RNFKELTELN VLAQVWAPVR NGSRYKLTTS GQPFVLDAHS NGLHQYRTVS LMYMFSVDGE 180 NDEVLGLPGR VFQQKLPEWT PNVQYYSSKE YSRLNHALHY NVRGTLALPV FEPPGQSCVA 240 VLELIMTSQK INYAPEVDKV CKALEAVNLR SSEILEHPYS QICNEDRQNA LSEILEILTV 300 VCETHNLPLA QTWVPCRHRS VLAHGGGLKK NCSSFDGYCM GQVCMSITEV AFYIIDSHTW 360 GFHDACVEHH LQQGQGVAGR AFLSQNMCFC RNITQFCKTD YPLVHYALMF DLTSSFSICL 420 QSSHTGGDDY VLEFFLPPSI NKFCEQKGLL GSILATMKQN FQSLKVASGV ELEEDGSVEI 480 VEIINGTVHS RLESVPIIQS TKLSARHDDA SPDMEEGVPL DQSRQKIITN FDDINDIGNL 540 DDYAGGSIDQ IHSLKTETKK KPSLRKRGKA EKSISLEVLQ DYFSGSLKDA AKSLGVCPTT 600 MKRICRQHGI SRWPSRKIKK VNRSLSKLKC VIESVHGVEG AFGLDSPSTS TIPIAAGSFN 660 EPSTSNKFEH HTSLSIMPSE PKKNENYLDA SKSEPQKPLG GMLIEGADSS KDLKNLCPST 720 DVVLEDQVLE ASRIHPPCSD FVHMQMQHMD TLNFAAQKEM KIVTIKATYR DDIIRFRVSW 780 NCGIVELREE IAKRLKLEVG TFDIKYLDDD QEWILVACDA DLQECMDILT LSGSNIIRLV 840 VHDILSILGS SVESSGE*

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MQKSEEENHD LPQKSKPLDE NVFSMDYDID FETSWPLDHI SNSMHPFFLQ NISEQPFSPI  60
WTFSDDDHNI AASGNNKNII TENRVENDDK HKRVTPHIGL PPLQNPHGYC LIKERMTQAL  120
RNFKELTELN VLAQVWAPVR NGSRYKLTTS GQPFVLDAHS NGLHQYRTVS LMYMFSVDGE  180
NDEVLGLPGR VFQQKLPEWT PNVQYYSSKE YSRLNHALHY NVRGTLALPV FEPPGQSCVA  240
VLELIMTSQK INYAPEVDKV CKALEAVNLR SSEILEHPYS QICNEDRQNA LSEILEILTV  300
VCETHNLPLA QTWVPCRHRS VLAHGGGLKK NCSSFDGYCM GQVCMSITEV AFYIIDSHTW  360
GFHDACVEHH LQQGQGVAGR AFLSQNMCFC RNITQFCKTD YPLVHYALMF DLTSSFSICL  420
QSSHTGGDDY VLEFFLPPSI NKFCEQKGLL GSILATMKQN FQSLKVASGV ELEEDGSVEI  480
VEIINGTVHS RLESVPIIQS TKLSARHDDA SPDMEEGVPL DQSRQKIITN FDDINDIGNL  540
DDYAGGSIDQ IHSLKTETKK KPSLRKRGKA EKSISLEVLQ DYFSGSLKDA AKSLGVCPTT  600
MKRICRQHGI SRWPSRKIKK VNRSLSKLKC VIESVHGVEG AFGLDSPSTS TIPIAAGSFN  660
EPSTSNKFEH HTSLSIMPSE PKKNENYLDA SKSEPQKPLG GMLIEGADSS KDLKNLCPST  720
DVVLEDQVLE ASRIHPPCSD FVHMQMQHMD TLNFAAQKEM KIVTIKATYR DDIIRFRVSW  780
NCGIVELREE IAKRLKLEVG TFDIKYLDDD QEWILVACDA DLQECMDILT LSGSNIIRLV  840
VHDILSILGS SVESSGE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr0022s0430.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013443315.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A072TUX0	0.0	A0A072TUX0_MEDTR; Plant regulator RWP-RK family protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Medtr0022s0430.1
Entrez Gene	25479714

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]