PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

58121

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

HB-other

Protein Properties

Length: 404aa MW: 42284.9 Da PI: 6.4269

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
58121	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.8	5.6e-06	250	267	40	57
-HHHHHHHHHHHHHHHHC CS Homeobox 40 terqVkvWFqNrRakekk 57 t +q+k+WF NrR+ +k+ 58121 250 TWKQIKTWFENRRMTQKR 267 669************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.924	229	268	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.42E-5	245	269	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-5	249	268	IPR009057	Homeodomain-like
CDD	cd00086	0.00598	252	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
RERERDDGGA DVKRSLSLPS MPLLLTPPAA VVAAKRAARA DLEEWQPAGT SLYIGMIAHA 60 GSPSHTRRQS SPSPPPPPPA EAPEIPYLPE PGKLLASEDH AAASILAADR SGDVVAAVEV 120 ESTDDWVAAA VRVEPAKERI RTTLKTKPGG ATAAATRSTT TSDSSDGDSD VDPFWTSQFQ 180 IDDLELASAL VLGGVDGRWV PLDVLRAMTT TTTTRPFAVE DDERQRENDR NESLASAVEE 240 LGDGEAHPVT WKQIKTWFEN RRMTQKRMRE GTRPVRRNNA NAASAGSPTE PAAPAGPGAP 300 GGEPATAAAA AAAPAKTRSH KKKPPAANVS AGTADASAAT RTPLAADVAK HGVKRSASRR 360 KLPASRRAPA TANETETESA AAAAAGEAEH SDLTRAMSWA DIR*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

RERERDDGGA DVKRSLSLPS MPLLLTPPAA VVAAKRAARA DLEEWQPAGT SLYIGMIAHA  60
GSPSHTRRQS SPSPPPPPPA EAPEIPYLPE PGKLLASEDH AAASILAADR SGDVVAAVEV  120
ESTDDWVAAA VRVEPAKERI RTTLKTKPGG ATAAATRSTT TSDSSDGDSD VDPFWTSQFQ  180
IDDLELASAL VLGGVDGRWV PLDVLRAMTT TTTTRPFAVE DDERQRENDR NESLASAVEE  240
LGDGEAHPVT WKQIKTWFEN RRMTQKRMRE GTRPVRRNNA NAASAGSPTE PAAPAGPGAP  300
GGEPATAAAA AAAPAKTRSH KKKPPAANVS AGTADASAAT RTPLAADVAK HGVKRSASRR  360
KLPASRRAPA TANETETESA AAAAAGEAEH SDLTRAMSWA DIR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP12959	2	2

Link Out ? help Back to Top
Phytozome	58121