PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 184581
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HB-other
Protein Properties Length: 394aa    MW: 42692 Da    PI: 10.2772
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
184581genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-08163223156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 
               rr +t+++++q+  Lee ++++     +e e+L + l     +L+++qV+ WF N+R   k
    184581 163 RRLKTRLSAQQTASLEERYKEKAQWRPTECEKLLEGLnalgpELSTEQVSRWFDNKRRYVK 223
               7889*****************************************************7655 PP
2Homeobox33.95.5e-11255302653
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               +  +++ e Le++F++n+ p  + r+ LA+ +g++e+qV+ WF  r +
    184581 255 RVRHSEREMLEAAFAQNSAPGISVRTALATAIGISEKQVTAWFTRRQQ 302
               5667899************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.374160225IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-8160229IPR009057Homeodomain-like
SuperFamilySSF466891.39E-8162231IPR009057Homeodomain-like
SMARTSM003890.0014162229IPR001356Homeobox domain
CDDcd000864.35E-5163226No hitNo description
PfamPF000464.5E-6163222IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-10232302IPR009057Homeodomain-like
PROSITE profilePS5007111.629247307IPR001356Homeobox domain
SuperFamilySSF466893.01E-9248302IPR009057Homeodomain-like
SMARTSM003892.5E-4253311IPR001356Homeobox domain
CDDcd000865.06E-6254305No hitNo description
PfamPF000462.0E-8255302IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDVDAAIGSL LPILGDPDLG ILPAVEVGGS APSVGAGETK EKPRPSRKND TAKGPTPASR  60
ANASEAGTSR PYLQQNPYTR QESQRKLEKH LNAAAHTPEF KPGAYKAPKL SDDALHLLAD  120
FIRRPAIRNQ LIPLVGELPD RKRRKTKAEK KEVKIVVSEE TGRRLKTRLS AQQTASLEER  180
YKEKAQWRPT ECEKLLEGLN ALGPELSTEQ VSRWFDNKRR YVKKQQARAR DSATADEGND  240
EVHAEEKRKT KVERRVRHSE REMLEAAFAQ NSAPGISVRT ALATAIGISE KQVTAWFTRR  300
QQTGRAPYGV SASVEDVENR SSKRANTAGS DAVIAGHLLG SLGASGHPLM MQQQGDFNPE  360
AGLNPGVLSA LGVPVGGDGR AQAGNGLTGV WGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142165RRKTKAEKKEVKIVVSEETGRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1515922