PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0074s0026.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family B3
Protein Properties Length: 1065aa    MW: 114034 Da    PI: 7.2686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0074s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.7e-17442542199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +
  Mapoly0074s0026.1.p 442 FEKMLSASDAGRIGRLVLPKACAEAYfpAISQPEGLPMKIQDITGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLLAGDTVTFSRLD 530
                          89**************************666667778999************9989999999***9.********************765 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            e++lv++ +r+
  Mapoly0074s0026.1.p 531 -PEGKLVMGYRRA 542
                          .788888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26435541IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-18439540IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-20440541No hitNo description
PfamPF023621.4E-14442542IPR003340B3 DNA binding domain
SMARTSM010195.9E-19442542IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56442543IPR003340B3 DNA binding domain
PROSITE profilePS5105012.951702752IPR011124Zinc finger, CW-type
PfamPF074966.2E-11707749IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1065 aa     Download sequence    Send to blast
MDTRMERAGP VPRKVCMNVK CGTSSSNSWK PGWQLRSGRA CELCEPCGSV FDQGRFCETF  60
HSDDAGWRTC NACKKRVHCG CIASLYSFVL LDAGGVECFS CATKTAPALP LKHLQHSVVP  120
PAPQPQRVDP LAARGWSETF GARAARNIEV GTTWQPYSSA WYPPNTAGFP IVRLQAELDR  180
PVEGSHAEPT LKGLVIRNED AYPESKFPPT KDSSASAEHP RGDSPDGELH AVESSPTCFS  240
RDPGAVGPDN VQGDCDGESL RVGVATSIGL ENIIGSSGKV GVDVTRVITG KSLFPTQDLL  300
NAGPSTGLSM SIGTSARKEG AGEGSQQGGI LGPAGALTTP AGAGSSGVSA ESRDLASKFT  360
GLSPYRSRHR QLLPRPYHAG TASPNSNAEV KSNEAGSVRV ARPPGQGRGR NQLLPRYWPR  420
ITDQELQQIT SGDSNATITP LFEKMLSASD AGRIGRLVLP KACAEAYFPA ISQPEGLPMK  480
IQDITGKEWL FQFRFWPNNN SRMYVLEGVT PCIQSMQLLA GDTVTFSRLD PEGKLVMGYR  540
RAPALLTSQD PKTATRGTSA NVSKGLSCGS IDGLYASTGA SLLSVSANAE ARNKSGQSDV  600
SDSGYGWSKA EKGMGKEGSM LEALSQVDRK QRGRPLGGKS KRLRLENEDS LELKNSWEEA  660
QELLRPPPSV VPSIVTIEGH EFEEYEEPPI FTKRTIFTSR QSGEQDQWAQ CDECGSWRRV  720
PPEVLVTARW TCTDNTWDHK RAMCSAPQEL SNDDVDHLLG LIPGEEFAIP EKNDTKAVGS  780
GPMVVETSAG LDALAIAAAM GETGRVSTSP SSPARTTKHP RHRPGCTCIV CIQPPSGKGP  840
KHKQNCLCNV CVTVKRRFKT LMLRRKKRLS EREAEGYVRR KRKDDVEVSS SSKLVTDAGS  900
LADGGSRHES SGGGTVVEGP RRDDALVADI SNSSGLTAFG LSFPSTNAGE DALVSKGQID  960
LNSQPEREEE PTKLGRVSMK QLLQDASQPL DTYLKQQGMT SLFGSQAAET SGAVGHCGGN  1020
SEKKSDEQSS SQCQDHSNEE ASQTSARIQG DSAGIPNQVS NQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-624195422124B3 domain-containing transcription repressor VAL1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1854866KRRFKTLMLRRKK
2854867KRRFKTLMLRRKKR
3862868LRRKKRL
4865882KKRLSEREAEGYVRRKRK
5878883RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WMF40.0A0A2R6WMF4_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-151HSI2-like 1