PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0069s0069.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HD-ZIP
Protein Properties Length: 326aa    MW: 36377 Da    PI: 7.8714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0069s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18181235256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Mapoly0069s0069.1.p 181 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 235
                          778899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-40181270191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eLr +
  Mapoly0069s0069.1.p 181 RKKLRLSKEQSALLEESFKEHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLQKELQELR-A 269
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Mapoly0069s0069.1.p 270 L 270
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-726144IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.1E-17169235IPR009057Homeodomain-like
SuperFamilySSF466894.71E-18172238IPR009057Homeodomain-like
PROSITE profilePS5007117.281177237IPR001356Homeobox domain
SMARTSM003891.7E-15179241IPR001356Homeobox domain
CDDcd000861.19E-15181238No hitNo description
PfamPF000461.7E-15181235IPR001356Homeobox domain
PROSITE patternPS000270212235IPR017970Homeobox, conserved site
PfamPF021831.3E-10237271IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24237280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMLLAEGKDR LREEVQRLRA MQGSGASLSL SVDLSMMVAR SQDDCSTVRR QCPVQLDLLP  60
MPTFPSAAAA PHPPTQQSQS QSHNPFPWKP LFNRSRSNSA SGNEDIEAAE TYSSGHGGSP  120
RGIDVNQIPS SADCDDVVVS SPNSINLKRE REKTHDFDLE RDRTCDISSR GSDEEEGGTT  180
RKKLRLSKEQ SALLEESFKE HSTLNPKQKN ALAKQLNLRP RQVEVWFQNR RARTKLKQTE  240
VDCELLKRCC ETLTEENRRL QKELQELRAL KVAPPCVIAH DFYMPLPAAT LTMCPSCERV  300
TTMDNKTLAF AKPGFSHYSQ SSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185TRKKLRL
2229237RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379713.11e-145homeobox-leucine zipper protein HAT4-like
SwissprotQ67UE25e-70HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2R6WPH00.0A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_219V6.11e-145(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-70homeobox from Arabidopsis thaliana