PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0049s0118.3.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

Nin-like

Protein Properties

Length: 485aa MW: 53065 Da PI: 6.3466

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0049s0118.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.5	4.8e-27	387	437	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++dl+++F+lpi++AAkeLg+c+TvLK+iCR++G++RWPhRkiks+ Mapoly0049s0118.3.p 387 TGKLKMSDLAQHFHLPINAAAKELGICPTVLKKICRRNGMRRWPHRKIKSI 437 56899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.247	377	457	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-25	390	437	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MAGGQLGSPN CDGVVLNSFN SPRFDISEFL KTPKDSTSEE PFFNFAGFNI PTPTFNLLNP 60 LPPFNSRRNP RGEGSEPDFS ALLFDKGVES EGTSVDDTLN GELIAFDEID ADIAKDSFAL 120 FSGTHENFLN HPISPLRINV PYHSAGTRIP LNFPPPMFTQ GSYLGGEPGG LMEVEDRALA 180 SMEHGASTSG GANPLMCPST PMDWSMPREG ALQTNSSQQH NTLQCDSCQI LRRIIHSNGV 240 QDTKLEIHGC DGQSYHAVLQ TRFCIDDGFP ATLEQQMVEF PVGNAEYVKQ FLLQYSLLRR 300 KEGFVLRHDS LSAGTEGSCL SDRVMVASAI RLPKQLGHSS LPDMLCTSSG QSKLHRSGSM 360 DSGEHTETAM TPVKPPKSNA AAQRERTGKL KMSDLAQHFH LPINAAAKEL GICPTVLKKI 420 CRRNGMRRWP HRKIKSIERI IATLEQTIAE GAGQGDEGIR MEIAMLRNER AQLCAGLLER 480 PENK*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MAGGQLGSPN CDGVVLNSFN SPRFDISEFL KTPKDSTSEE PFFNFAGFNI PTPTFNLLNP  60
LPPFNSRRNP RGEGSEPDFS ALLFDKGVES EGTSVDDTLN GELIAFDEID ADIAKDSFAL  120
FSGTHENFLN HPISPLRINV PYHSAGTRIP LNFPPPMFTQ GSYLGGEPGG LMEVEDRALA  180
SMEHGASTSG GANPLMCPST PMDWSMPREG ALQTNSSQQH NTLQCDSCQI LRRIIHSNGV  240
QDTKLEIHGC DGQSYHAVLQ TRFCIDDGFP ATLEQQMVEF PVGNAEYVKQ FLLQYSLLRR  300
KEGFVLRHDS LSAGTEGSCL SDRVMVASAI RLPKQLGHSS LPDMLCTSSG QSKLHRSGSM  360
DSGEHTETAM TPVKPPKSNA AAQRERTGKL KMSDLAQHFH LPINAAAKEL GICPTVLKKI  420
CRRNGMRRWP HRKIKSIERI IATLEQTIAE GAGQGDEGIR MEIAMLRNER AQLCAGLLER  480
PENK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358583.1	0.0	uncharacterized protein LOC112273714 isoform X4
TrEMBL	A0A1B1FGW4	0.0	A0A1B1FGW4_MARPO; RWP1
STRING	PP1S387_8V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Mapoly0049s0118.3.p