PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0014s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 780aa MW: 83670.9 Da PI: 7.5478 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 75.1 | 8.3e-24 | 506 | 555 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dls+yF+l++ dAAk+Lgv++T+LK++CR++G+kRWP Rk++sl Mapoly0014s0044.1.p 506 HHLKLSDLSAYFHLSVVDAAKKLGVSQTTLKKACRKFGLKRWPGRKVRSL 555 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.166 | 491 | 575 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-20 | 508 | 555 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 780 aa Download sequence Send to blast |
MSQKRCRSSP ESSRYVLVDE FGNPAPNCAH SRTISERCEF PLFATACTTD PLSPRSDGGR 60 ASEWSVQAQA NGREGCRVQK NARRLVFIGE NDSIQRLQLA KADGSEPEEL DVDATLEDVI 120 ICMGNKHLVA IITPAGKPSG NGRPEAANEK LGPTSPMAVS SHHQKPKLRK DVASCYALPA 180 TPAALTAEDS DLATFGLASR VPPFKSNCEP PVRGLKITIP SSDPIPAAFH DERNVFGQDS 240 GLDQRPPVVP QAPALAPASA SAPAPRASAF IGEILSSNNN HNASIPGAVS SSISTPSPAE 300 LAHFLVKGSS LPLSRPSGGM CLNNPMYPPC HSAGFQTFAS ALISRLPVKA ASNAACPSPQ 360 PNIALLVQFL ASQLRAFIPV SGAQSSPNSA PRSPSGARSK ASTVEVVPVA TKPGDMSRCQ 420 TGDKPSERPC SKEFREGPDT ESPKLASDHV KASVSESHEK DDSSSSANVN TTAAPSSDGL 480 ESETMQDRSE LIFLVNRRSK TGVGTHHLKL SDLSAYFHLS VVDAAKKLGV SQTTLKKACR 540 KFGLKRWPGR KVRSLESTIH GLEHTIAVGQ GAGMEELTEA YMRSEVSKLQ QEMDQLVHGT 600 PPQQHSPVAR TADLYKRLYS RGWRSKYHSS CGRFDLDLNM DSRDSEGILS FTHRKSIEEV 660 KPAITRSKTD HVGPTSQEME TNGNTPMASL CKDDSLSQTG NGLTDNIHDN ASSFSKGVQL 720 ELMNTSTPDT AVDFVASGNR IRTQKLEELP VDVEVIELDR EKDLTTERCP KRHKAETIT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024396538.1 | 1e-161 | uncharacterized protein LOC112292373 | ||||
TrEMBL | A0A2R6XHA9 | 0.0 | A0A2R6XHA9_MARPO; Uncharacterized protein | ||||
STRING | PP1S250_38V6.1 | 1e-160 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP18778 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-13 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0014s0044.1.p |