PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010110065.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Trihelix

Protein Properties

Length: 295aa MW: 34076.2 Da PI: 6.7927

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010110065.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.9	1.8e-20	17	103	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +Liea+++++ +l+rg+lk p+Wee++ + +++ ++s+ qC++k+e+l++r++ ++ + ss +pyfd ++ XP_010110065.1 17 WTHEETVHLIEAYQQKWYSLNRGQLKSPQWEEIAVTVaarcgydFSHPSSKSALQCRHKMEKLRQRFRSHSHRLGP-----SSPWPYFDLMD 103 ***********************************9999*************************999997.....568***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.7E-18	16	105	No hit	No description
PROSITE profile	PS50090	5.993	16	80	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSSSPEPTGK KPQPIPWTHE ETVHLIEAYQ QKWYSLNRGQ LKSPQWEEIA VTVAARCGYD 60 FSHPSSKSAL QCRHKMEKLR QRFRSHSHRL GPSSPWPYFD LMDRLLRGPF PISARPMDYD 120 DEDQPCHAAA YEPDLDHRDV HHDNDDDDDD ESSYTKSRSI NYILRQPTIV NRFAVGEEKL 180 GIGGRCADDG VHRVFWEEPA AKRARNDGCD VEREKGRESE SVLRLAKEIR AFSERIVGME 240 SMKMEMMKET ERCRIEMESK RIEMIIRSQH KIVDSIARAF GSSSPNRLSV TKAES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010110065.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110065.1	0.0	uncharacterized protein LOC21386591
TrEMBL	W9S464	0.0	W9S464_9ROSA; Uncharacterized protein
STRING	XP_010110065.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-52	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	21386591